Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ataRT/DUF1778(antitoxin)
Location 297762..298562 Replicon chromosome
Accession NZ_OW848980
Organism Escherichia coli isolate 23

Toxin (Protein)


Gene name ataT Uniprot ID F4NNI0
Locus tag LQ157_RS01405 Protein ID WP_000342449.1
Coordinates 298035..298562 (+) Length 176 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID F4NNI1
Locus tag LQ157_RS01400 Protein ID WP_001277108.1
Coordinates 297762..298028 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQ157_RS01380 (293419) 293419..294087 + 669 WP_000617723.1 cell division ATP-binding protein FtsE -
LQ157_RS01385 (294080) 294080..295138 + 1059 WP_001042003.1 permease-like cell division protein FtsX -
LQ157_RS01390 (295383) 295383..296237 + 855 WP_000130217.1 RNA polymerase sigma factor RpoH -
LQ157_RS01395 (296509) 296509..297612 + 1104 WP_001350438.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -
LQ157_RS01400 (297762) 297762..298028 + 267 WP_001277108.1 type II toxin-antitoxin system antitoxin AtaR Antitoxin
LQ157_RS01405 (298035) 298035..298562 + 528 WP_000342449.1 type II toxin-antitoxin system toxin acetyltransferase AtaT Toxin
LQ157_RS01410 (298559) 298559..298942 - 384 WP_000778777.1 aspartate 1-decarboxylase autocleavage activator PanM -
LQ157_RS01415 (299366) 299366..300475 + 1110 WP_000827696.1 high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK -
LQ157_RS01420 (300523) 300523..301449 + 927 WP_000003004.1 high-affinity branched-chain amino acid ABC transporter permease LivH -
LQ157_RS01425 (301446) 301446..302723 + 1278 WP_000803799.1 branched chain amino acid ABC transporter permease LivM -
LQ157_RS01430 (302720) 302720..303487 + 768 WP_000082101.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(88-150)

Antitoxin

Vibrio phage ICP1, Orf50

(8-86)


Sequences

Toxin        


Download         Length: 176 a.a.        Molecular weight: 19691.70 Da        Isoelectric Point: 7.7457

>T295564 WP_000342449.1 NZ_OW848980:298035-298562 [Escherichia coli]
MDDLTIEILTDDADYDLQRFDCGEEALNLFLTTHLVRQHRNKILRAYILCRNTPERQVLGYYTLCGSCFERAALPSKSKQ
KKIPYKNIPSVTLGRLAIDRSLQGQGWGATLVAHAMKVVWSASLAVGIHGLFVEALNKKAHTFYQSLGFIPLVGENENAL
FFPTKSIELLFTQSD

Download         Length: 528 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9910.31 Da        Isoelectric Point: 10.0863

>AT295564 WP_001277108.1 NZ_OW848980:297762-298028 [Escherichia coli]
MSAVKKQRIDLRLTDDDKSMIEEAAAISNQSVSQFMLNSASQRAAEVIEQHRRVILNEESWTRVMDALSNPPSPGEKLKR
AAKRLQGM

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CLZ4

Antitoxin

Source ID Structure
PDB 6GTS
PDB 6AJN
PDB 6GTQ
PDB 6GTO
PDB 6GTR
PDB 6AJM
AlphaFold DB A0A829CN24

References