295522

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 1709379..1710033 Replicon chromosome
Accession NZ_OW848785
Organism Escherichia coli isolate 131

Toxin (Protein)


Gene name cptA Uniprot ID F4T2L4
Locus tag LQ117_RS08160 Protein ID WP_000244765.1
Coordinates 1709379..1709786 (-) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID F4T2L5
Locus tag LQ117_RS08165 Protein ID WP_000354050.1
Coordinates 1709767..1710033 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQ117_RS08140 (1705336) 1705336..1707069 - 1734 WP_000813195.1 single-stranded-DNA-specific exonuclease RecJ -
LQ117_RS08145 (1707075) 1707075..1707785 - 711 WP_000715230.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
LQ117_RS08150 (1707810) 1707810..1708706 - 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
LQ117_RS08155 (1708818) 1708818..1709339 + 522 WP_001055874.1 flavodoxin FldB -
LQ117_RS08160 (1709379) 1709379..1709786 - 408 WP_000244765.1 protein YgfX Toxin
LQ117_RS08165 (1709767) 1709767..1710033 - 267 WP_000354050.1 FAD assembly factor SdhE Antitoxin
LQ117_RS08170 (1710276) 1710276..1711256 + 981 WP_000886084.1 tRNA-modifying protein YgfZ -
LQ117_RS08175 (1711333) 1711333..1711992 - 660 WP_000250275.1 hemolysin III family protein -
LQ117_RS08180 (1712156) 1712156..1712467 - 312 WP_001182956.1 N(4)-acetylcytidine aminohydrolase -
LQ117_RS08185 (1712512) 1712512..1713945 + 1434 WP_001296350.1 6-phospho-beta-glucosidase BglA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16043.95 Da        Isoelectric Point: 11.5202

>T295522 WP_000244765.1 NZ_OW848785:c1709786-1709379 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLIPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10535.07 Da        Isoelectric Point: 5.1599

>AT295522 WP_000354050.1 NZ_OW848785:c1710033-1709767 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRTFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A454A7D7

Antitoxin

Source ID Structure
AlphaFold DB A0A061L3F4

References