Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3765638..3765781 | Replicon | chromosome |
| Accession | NZ_OW707734 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain BRD948 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3765640..3765742 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3765638..3765781 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBX04_RS18675 | 3762916..3764046 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| NBX04_RS18680 | 3764332..3764727 | - | 396 | Protein_3645 | DUF977 family protein | - |
| NBX04_RS18685 | 3764740..3764850 | - | 111 | Protein_3646 | replication protein | - |
| NBX04_RS18690 | 3764851..3765212 | + | 362 | Protein_3647 | recombinase RecT | - |
| NBX04_RS18695 | 3765211..3765519 | + | 309 | Protein_3648 | tyrosine-type recombinase/integrase | - |
| - | 3765638..3765781 | + | 144 | - | - | Antitoxin |
| - | 3765640..3765742 | - | 103 | - | - | Toxin |
| NBX04_RS18700 | 3765883..3766236 | - | 354 | WP_000722366.1 | YebY family protein | - |
| NBX04_RS18705 | 3766253..3767128 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| NBX04_RS18710 | 3767129..3767503 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| NBX04_RS18715 | 3767641..3767871 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| NBX04_RS18720 | 3767979..3768635 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| NBX04_RS18725 | 3768659..3769357 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 3747370..3787654 | 40284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T295510 NZ_OW707734:c3765742-3765640 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT295510 NZ_OW707734:3765638-3765781 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
