Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 904784..904950 | Replicon | chromosome |
| Accession | NC_021500 | ||
| Organism | Enterobacter sp. R4-368 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 904788..904890 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 904784..904950 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H650_RS04140 | 901186..901425 | + | 240 | WP_017456958.1 | DUF1480 family protein | - |
| H650_RS04145 | 901531..901722 | + | 192 | WP_017456957.1 | YebW family protein | - |
| H650_RS04150 | 901723..902367 | - | 645 | WP_020454100.1 | protein-serine/threonine phosphatase | - |
| H650_RS04155 | 902541..903488 | + | 948 | WP_020454101.1 | VirK/YbjX family protein | - |
| H650_RS04160 | 903754..904173 | - | 420 | WP_189660093.1 | hypothetical protein | - |
| - | 904784..904950 | + | 167 | - | - | Antitoxin |
| - | 904788..904890 | - | 103 | - | - | Toxin |
| H650_RS04165 | 905048..905386 | - | 339 | WP_044489676.1 | YebY family protein | - |
| H650_RS04170 | 905405..906277 | - | 873 | WP_020454104.1 | copper homeostasis membrane protein CopD | - |
| H650_RS04175 | 906278..906652 | - | 375 | WP_020454105.1 | CopC domain-containing protein YobA | - |
| H650_RS04180 | 906790..907020 | + | 231 | WP_020454106.1 | DNA polymerase III subunit theta | - |
| H650_RS04185 | 907032..907694 | + | 663 | WP_020454107.1 | exodeoxyribonuclease X | - |
| H650_RS04190 | 907676..909751 | - | 2076 | WP_020454108.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T29536 NC_021500:c904890-904788 [Enterobacter sp. R4-368]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT29536 NC_021500:904784-904950 [Enterobacter sp. R4-368]
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACAGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACAGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
