Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1(toxin) |
Location | 754409..755064 | Replicon | chromosome |
Accession | NZ_OW052302 | ||
Organism | Mycobacterium tuberculosis strain Lineage 3.1.1 isolate Mycobacterium tuberculosis |
Toxin (Protein)
Gene name | vapC | Uniprot ID | P9WFA6 |
Locus tag | MR176_RS03445 | Protein ID | WP_003898861.1 |
Coordinates | 754663..755064 (+) | Length | 134 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | G0TIK2 |
Locus tag | MR176_RS03440 | Protein ID | WP_003407272.1 |
Coordinates | 754409..754666 (+) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MR176_RS03420 | 749596..751563 | - | 1968 | WP_003407285.1 | primosomal protein N' | - |
MR176_RS03425 | 751644..752381 | - | 738 | WP_031647000.1 | lysoplasmalogenase | - |
MR176_RS03430 | 752380..753342 | + | 963 | WP_003407279.1 | alpha/beta hydrolase | - |
MR176_RS03435 | 753367..754326 | + | 960 | WP_003407276.1 | alpha/beta hydrolase | - |
MR176_RS03440 | 754409..754666 | + | 258 | WP_003407272.1 | CopG family transcriptional regulator | Antitoxin |
MR176_RS03445 | 754663..755064 | + | 402 | WP_003898861.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
MR176_RS03450 | 755319..757049 | + | 1731 | WP_031651139.1 | PE family protein | - |
MR176_RS03455 | 757095..758129 | - | 1035 | WP_003407264.1 | AraC family transcriptional regulator | - |
MR176_RS03460 | 758207..759592 | + | 1386 | WP_003407260.1 | cytochrome P450 | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 14952.43 Da Isoelectric Point: 11.4656
>T295213 WP_003898861.1 NZ_OW052302:754663-755064 [Mycobacterium tuberculosis]
MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASFRVQPATEVIARRAGDMMRR
YRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLKPPFAVPGHRPRA
MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASFRVQPATEVIARRAGDMMRR
YRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLKPPFAVPGHRPRA
Download Length: 402 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A045ISB0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | G0TIK2 |