Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4279162..4279307 | Replicon | chromosome |
| Accession | NZ_OV049808 | ||
| Organism | Klebsiella pneumoniae strain DJ isolate DJ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4279198..4279300 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4279162..4279307 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRA90_RS20785 | 4274292..4276352 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LRA90_RS20790 | 4276356..4277015 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LRA90_RS20795 | 4277094..4277324 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRA90_RS20800 | 4277437..4277811 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| LRA90_RS20805 | 4277815..4278684 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LRA90_RS20810 | 4278701..4279039 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4279162..4279307 | - | 146 | - | - | Antitoxin |
| - | 4279198..4279300 | + | 103 | - | - | Toxin |
| LRA90_RS20815 | 4279676..4279819 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| LRA90_RS20820 | 4279924..4280892 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LRA90_RS20825 | 4281049..4281702 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| LRA90_RS20830 | 4281699..4281890 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LRA90_RS20835 | 4281988..4282227 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LRA90_RS20840 | 4282343..4283776 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T294986 NZ_OV049808:4279198-4279300 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT294986 NZ_OV049808:c4279307-4279162 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
