Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2894964..2895106 | Replicon | chromosome |
| Accession | NZ_OU963893 | ||
| Organism | Unidentified bacterial endosymbiont isolate Enterobacter_chilo | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2894968..2895071 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2894964..2895106 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL510_RS13785 | 2891465..2892913 | + | 1449 | WP_253377692.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NL510_RS13790 | 2893017..2893256 | + | 240 | WP_253377694.1 | YebV family protein | - |
| NL510_RS13795 | 2893591..2894553 | + | 963 | WP_253377696.1 | VirK/YbjX family protein | - |
| - | 2894964..2895106 | + | 143 | - | - | Antitoxin |
| - | 2894968..2895071 | - | 104 | - | - | Toxin |
| NL510_RS13800 | 2895211..2895549 | - | 339 | WP_253377698.1 | YebY family protein | - |
| NL510_RS13805 | 2895566..2896435 | - | 870 | WP_253377700.1 | copper homeostasis membrane protein CopD | - |
| NL510_RS13810 | 2896437..2896808 | - | 372 | WP_253377709.1 | CopC domain-containing protein YobA | - |
| NL510_RS13815 | 2896946..2897176 | + | 231 | WP_253377711.1 | DNA polymerase III subunit theta | - |
| NL510_RS13820 | 2897288..2897938 | + | 651 | WP_253377713.1 | carbon-nitrogen hydrolase family protein | - |
| NL510_RS13825 | 2897963..2898625 | + | 663 | WP_253377714.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T294954 NZ_OU963893:c2895071-2894968 [unidentified bacterial endosymbiont]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT294954 NZ_OU963893:2894964-2895106 [unidentified bacterial endosymbiont]
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
