Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) FicTA/Fic(toxin)
Location 3515..4458 Replicon plasmid 2
Accession NZ_OU701462
Organism Campylobacter upsaliensis strain Campylobacter upsaliensis CCUG 14913

Toxin (Protein)


Gene name Fic Uniprot ID -
Locus tag LDP94_RS08500 Protein ID WP_115633410.1
Coordinates 3754..4458 (+) Length 235 a.a.

Antitoxin (Protein)


Gene name Fti Uniprot ID -
Locus tag LDP94_RS08495 Protein ID WP_082200884.1
Coordinates 3515..3754 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LDP94_RS08480 (CU14913_001695) 1616..2461 + 846 WP_115633396.1 YopX family protein -
LDP94_RS08485 (CU14913_001696) 2727..3056 + 330 WP_004276316.1 hypothetical protein -
LDP94_RS08490 (CU14913_001697) 3053..3475 + 423 WP_082200885.1 VapD family protein -
LDP94_RS08495 (CU14913_001698) 3515..3754 + 240 WP_082200884.1 hypothetical protein Antitoxin
LDP94_RS08500 (CU14913_001699) 3754..4458 + 705 WP_115633410.1 Fic family protein Toxin
LDP94_RS08505 (CU14913_001700) 4583..5242 + 660 WP_115633397.1 ParA family protein -
LDP94_RS08510 (CU14913_001701) 5295..5537 + 243 WP_115633398.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..39618 39618


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(53-157)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 235 a.a.        Molecular weight: 27217.16 Da        Isoelectric Point: 7.4005

>T294883 WP_115633410.1 NZ_OU701462:3754-4458 [Campylobacter upsaliensis]
MWDTQDTYTDIDTFLLSTNKVNATSLSDLEHKERILAQLAMQELSKNEIKGNFNYEHLKAIHQFIFKDIYTWAGKDRYEE
KFFKALHKGDSQFCVGVLIPQESKRIFDGLMEKELLKTCKNDEQFIKELANFMADLNAMHPFCEGNGRTQRIFINQLAKN
AGYELDLNLTPKEIMLRASIEAMNHQNSSLEKIIKNNLKKIDMSKQREIEAMQEAVKKASQNLKSKDKSKDLDR

Download         Length: 705 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9094.37 Da        Isoelectric Point: 4.6652

>AT294883 WP_082200884.1 NZ_OU701462:3515-3754 [Campylobacter upsaliensis]
MLQNCKEVYSLEESLNILNKYANNLTPRQYDNIKSIICSFAIENMHLNEEDILNGIAIQKGDKSVLEITQNYKAQWGCL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References