Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2060588..2060859 | Replicon | chromosome |
| Accession | NZ_OU701452 | ||
| Organism | Escherichia coli isolate CNR65D6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2060626..2060729 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2060588..2060859 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LWS60_RS09860 | 2057745..2059184 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LWS60_RS09865 | 2059302..2059538 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LWS60_RS09870 | 2059643..2059834 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LWS60_RS09875 | 2059835..2060491 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2060588..2060859 | + | 272 | - | - | Antitoxin |
| - | 2060626..2060729 | - | 104 | - | - | Toxin |
| LWS60_RS09880 | 2060887..2061228 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LWS60_RS09885 | 2061241..2062113 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LWS60_RS09890 | 2062117..2062491 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LWS60_RS09895 | 2062630..2062860 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LWS60_RS09900 | 2062962..2063618 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LWS60_RS09905 | 2063642..2064304 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2057739..2068169 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T294866 NZ_OU701452:c2060729-2060626 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT294866 NZ_OU701452:2060588-2060859 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
