Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2265783..2266054 | Replicon | chromosome |
| Accession | NZ_OU701449 | ||
| Organism | Escherichia coli isolate CNR85I8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2265913..2266016 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2265783..2266054 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LWS57_RS10960 | 2262338..2263000 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LWS57_RS10965 | 2263024..2263680 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LWS57_RS10970 | 2263782..2264012 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LWS57_RS10975 | 2264151..2264525 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LWS57_RS10980 | 2264529..2265401 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LWS57_RS10985 | 2265414..2265755 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2265783..2266054 | - | 272 | - | - | Antitoxin |
| - | 2265913..2266016 | + | 104 | - | - | Toxin |
| LWS57_RS10990 | 2266151..2266807 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LWS57_RS10995 | 2266808..2266999 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LWS57_RS11000 | 2267104..2267340 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LWS57_RS11005 | 2267458..2268897 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T294838 NZ_OU701449:2265913-2266016 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT294838 NZ_OU701449:c2266054-2265783 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
