Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YefM-YoeB
Location 1545603..1546108 Replicon chromosome
Accession NZ_OU594967
Organism Celerinatantimonas diazotrophica isolate CEDIAZO1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LDO33_RS07250 Protein ID WP_131913120.1
Coordinates 1545603..1545857 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LDO33_RS07255 Protein ID WP_131912901.1
Coordinates 1545854..1546108 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LDO33_RS07225 (CEDIAZO_01449) 1541186..1541695 + 510 WP_165872726.1 SCP2 sterol-binding domain-containing protein -
LDO33_RS07230 (CEDIAZO_01450) 1541692..1542840 - 1149 WP_131912905.1 DUF945 family protein -
LDO33_RS07235 (CEDIAZO_01451) 1542867..1543133 - 267 WP_131912904.1 YfhL family 4Fe-4S dicluster ferredoxin -
LDO33_RS07240 (CEDIAZO_01452) 1543781..1544698 + 918 WP_131912903.1 hypothetical protein -
LDO33_RS07245 (CEDIAZO_01454) 1545031..1545408 + 378 WP_131912902.1 hypothetical protein -
LDO33_RS07250 (CEDIAZO_01455) 1545603..1545857 + 255 WP_131913120.1 type II toxin-antitoxin system prevent-host-death family antitoxin Toxin
LDO33_RS07255 (CEDIAZO_01456) 1545854..1546108 + 255 WP_131912901.1 Txe/YoeB family addiction module toxin Antitoxin
LDO33_RS07260 (CEDIAZO_01457) 1546310..1547461 - 1152 WP_131912900.1 hypothetical protein -
LDO33_RS07265 1548753..1548974 + 222 WP_131912899.1 hypothetical protein -
LDO33_RS07270 1549005..1549349 + 345 Protein_1411 ORF6N domain-containing protein -
LDO33_RS07275 (CEDIAZO_01459) 1549990..1550301 - 312 WP_131912898.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)

Antitoxin

Toxin YoeB

(5-84)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9331.50 Da        Isoelectric Point: 4.5972

>T294773 WP_131913120.1 NZ_OU594967:1545603-1545857 [Celerinatantimonas diazotrophica]
MDVMSYSQFRAQLAKTLDDVNDDHKPVMITRQNGKPAIVMSVEDFKAYEETAYLMASPKNAQRLNAAISELEGGHGSEKG
LIEE

Download         Length: 255 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 10382.92 Da        Isoelectric Point: 9.3466

>AT294773 WP_131912901.1 NZ_OU594967:1545854-1546108 [Celerinatantimonas diazotrophica]
MMLVWASSAWEDYLYWQQTDKKILKRINQLIKEISREPFEGIGDPEPLKHQWTGYWSRRINREHRLVYKAKENEVLIAQC
RYHY

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References