Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3788896..3789167 | Replicon | chromosome |
| Accession | NZ_OU342919 | ||
| Organism | Escherichia coli isolate UR21/11-869 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3789026..3789129 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3788896..3789167 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIX80_RS18395 | 3785451..3786113 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LIX80_RS18400 | 3786137..3786793 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LIX80_RS18405 | 3786895..3787125 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LIX80_RS18410 | 3787264..3787638 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| LIX80_RS18415 | 3787642..3788514 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LIX80_RS18420 | 3788527..3788868 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3788896..3789167 | - | 272 | - | - | Antitoxin |
| - | 3789026..3789129 | + | 104 | - | - | Toxin |
| LIX80_RS18425 | 3789264..3789920 | + | 657 | WP_226397317.1 | protein-serine/threonine phosphatase | - |
| LIX80_RS18430 | 3789921..3790112 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LIX80_RS18435 | 3790217..3790453 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LIX80_RS18440 | 3790571..3792010 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T294741 NZ_OU342919:3789026-3789129 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT294741 NZ_OU342919:c3789167-3788896 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
