Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 2834790..2835370 Replicon chromosome
Accession NZ_OU015584
Organism Parvicella tangerina strain AS29M-1

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag NYQ84_RS12490 Protein ID WP_258542749.1
Coordinates 2834790..2835089 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NYQ84_RS12495 Protein ID WP_258542750.1
Coordinates 2835089..2835370 (+) Length 94 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NYQ84_RS12480 (CRYO30217_02525) 2831008..2832828 + 1821 WP_258542747.1 30S ribosomal protein S1 -
NYQ84_RS12485 (CRYO30217_02526) 2832949..2834541 + 1593 WP_258542748.1 hypothetical protein -
NYQ84_RS12490 (CRYO30217_02527) 2834790..2835089 + 300 WP_258542749.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NYQ84_RS12495 (CRYO30217_02528) 2835089..2835370 + 282 WP_258542750.1 putative addiction module antidote protein Antitoxin
NYQ84_RS12500 (CRYO30217_02529) 2835465..2835773 + 309 WP_258542751.1 hypothetical protein -
NYQ84_RS12505 (CRYO30217_02531) 2836068..2836898 + 831 WP_258542752.1 hypothetical protein -
NYQ84_RS12510 (CRYO30217_02532) 2836990..2837739 + 750 WP_258542753.1 DUF2071 domain-containing protein -
NYQ84_RS12515 (CRYO30217_02533) 2837805..2838137 + 333 WP_258542754.1 hypothetical protein -
NYQ84_RS12520 (CRYO30217_02534) 2838579..2838971 + 393 WP_258542755.1 hypothetical protein -
NYQ84_RS12525 (CRYO30217_02535) 2839143..2839574 + 432 WP_258542756.1 OsmC family peroxiredoxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-91)

Antitoxin

Uncharacterized protein HI1420

(8-90)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11640.56 Da        Isoelectric Point: 10.2678

>T294685 WP_258542749.1 NZ_OU015584:2834790-2835089 [Parvicella tangerina]
MYIIEKTPEFDKWLRKLKDRRAKAKILFRIQRIEEQGNFGDCQPIGEGLSELRIHYAKGYRVYIKEYSGTIVILLNGGDK
STQSKDIAKAKDLWTKYKK

Download         Length: 300 bp

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10117.50 Da        Isoelectric Point: 4.3855

>AT294685 WP_258542750.1 NZ_OU015584:2835089-2835370 [Parvicella tangerina]
MSTTKFNIADYLDDNEMIVEYLNNILEEGDSSDIISAIGHVAKAIGMTKIAEDTGMSRPSLYKALSENSKPQFETILKVL
RAIGGNIQINPAA

Download         Length: 282 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References