Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 2453722..2454269 Replicon chromosome
Accession NZ_OU015319
Organism Cloacibacterium caeni isolate Isolate1

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag KKQ79_RS11415 Protein ID WP_213190241.1
Coordinates 2453722..2454021 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag KKQ79_RS11420 Protein ID WP_213190242.1
Coordinates 2454024..2454269 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KKQ79_RS11385 2449060..2449614 + 555 WP_213190236.1 type II secretion system protein GspG -
KKQ79_RS11390 2449616..2450290 + 675 WP_213190237.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
KKQ79_RS11395 2450326..2450880 + 555 WP_250131245.1 YdeI/OmpD-associated family protein -
KKQ79_RS11400 2450985..2451728 + 744 WP_069799888.1 3-oxoacyl-[acyl-carrier-protein] reductase -
KKQ79_RS11405 2451836..2452414 + 579 WP_213190239.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
KKQ79_RS11410 2452642..2453685 - 1044 WP_213190240.1 GMP reductase -
KKQ79_RS11415 2453722..2454021 - 300 WP_213190241.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
KKQ79_RS11420 2454024..2454269 - 246 WP_213190242.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
KKQ79_RS11425 2454638..2455369 - 732 WP_213190243.1 hypothetical protein -
KKQ79_RS11430 2455903..2456763 - 861 WP_213190244.1 TraB/GumN family protein -
KKQ79_RS11435 2456925..2457692 - 768 WP_213190245.1 5'/3'-nucleotidase SurE -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 12084.67 Da        Isoelectric Point: 4.6983

>T294609 WP_213190241.1 NZ_OU015319:c2454021-2453722 [Cloacibacterium caeni]
MNYKISIEAEKDLENIWLYTLENWSIEQADYYFDLIMNEIEYLAENPKFGQDFGEVRKGYFRSRVKSHFIFYRINLKNND
IEIIRILHQQMDVDSHLNV

Download         Length: 300 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9379.66 Da        Isoelectric Point: 9.9763

>AT294609 WP_213190242.1 NZ_OU015319:c2454269-2454024 [Cloacibacterium caeni]
MAKNTSILLGEYFENFISEQIKSGKFSSASELIRTALRVFEHQESQKTLLINELKKGEKSGFSKDFNRDSFKEKLHKKHA
E

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References