Detailed information of TA system TA029450

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/AbrB(antitoxin)
• Location: 695544..696190
• Replicon: chromosome
• Accession: NC_021251
• Organism: Mycobacterium tuberculosis CCDC5079

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ88
• Locus tag: CFBS_RS03110
• Protein ID: WP_003403137.1
• Coordinates: 695544..695957 (-)
• Length: 138 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ89
• Locus tag: CFBS_RS03115
• Protein ID: WP_003403139.1
• Coordinates: 695954..696190 (-)
• Length: 79 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CFBS_RS03090	691627..693177	+	1551	WP_003905349.1	MCE family protein	-
CFBS_RS03095	693229..693621	-	393	WP_003403122.1	type II toxin-antitoxin system toxin ribonuclease C4	-
CFBS_RS03100	693618..693875	-	258	WP_003403125.1	type II toxin-antitoxin system antitoxin VapB4	-
CFBS_RS03105	694058..695293	-	1236	WP_003403128.1	ATP-binding protein	-
CFBS_RS03110	695544..695957	-	414	WP_003403137.1	type II toxin-antitoxin system VapC family toxin	Toxin
CFBS_RS03115	695954..696190	-	237	WP_003403139.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Antitoxin
CFBS_RS03120	696294..696800	-	507	WP_003900973.1	two component system sensor kinase HK1	-
CFBS_RS03125	696914..697444	-	531	WP_003917320.1	two component system sensor kinase HK2	-
CFBS_RS03130	697428..698123	-	696	WP_003918099.1	two-component system response regulator TcrA	-
CFBS_RS03135	698246..698557	+	312	WP_003403164.1	hypothetical protein	-
CFBS_RS03140	698629..699579	+	951	WP_003900184.1	DUF1259 domain-containing protein	-
CFBS_RS03145	699820..700404	+	585	WP_003403171.1	IS607-like element IS1536 family transposase	-
CFBS_RS03150	700406..701116	+	711	Protein_623	transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (7-126)

Antitoxin

• SpoVT-AbrB domain (3-43)

Sequences

Toxin

Protein

• Length: 138 a.a.
• Molecular weight: 14786.14 Da
• Isoelectric Point: 8.1405

>T29450 WP_003403137.1 NC_021251:c695957-695544 [Mycobacterium tuberculosis CCDC5079]
VKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSR
TTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHVVVAA

Nucleotide

• Length: 414 bp

>T29450 NC_021251:c695957-695544 [Mycobacterium tuberculosis CCDC5079]
GTGAAACCGCCGCTGGCAGTGGACACCAGCGTCGCGATTCCGTTGCTGGTACGGACCCATACCGCGCATGCGGCGGTTGT
CGCCTGGTGGGCACATCGGGAGGCCGCGCTGTGCGGGCACGCCCTGGCCGAAACCTACTCCGTGCTGACCCGCCTGCCGC
GTGACCTACGACTGGCACCGATGGACGCCGCGCGGCTTCTTACCGAACGCTTTGCGGCACCGCTGTTGTTGAGTTCCCGC
ACCACTGAACATCTCCCACGCGTGCTGGCCCAATTCGAGATCACTGGTGGCGCGGTCTATGACGCTCTCGTGGCCCTTGC
CGCCGCCGAGCACCGGGCTGAACTCGCCACACGCGATGCTCGAGCCAAGGACACTTACGAAAAGATCGGCGTCCACGTCG
TTGTCGCCGCGTGA

Antitoxin

Protein

• Length: 79 a.a.
• Molecular weight: 8212.41 Da
• Isoelectric Point: 5.0351

>AT29450 WP_003403139.1 NC_021251:c696190-695954 [Mycobacterium tuberculosis CCDC5079]
MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTIDDEVVFGLIDSGRK

Nucleotide

• Length: 237 bp

>AT29450 NC_021251:c696190-695954 [Mycobacterium tuberculosis CCDC5079]
ATGAAGGCTGTTGTGGATGCGGCTGGCCGCATCGTCGTACCCAAACCGCTGCGCGAAGCCTTGGGGCTGCAACCGGGGTC
CACCGTGGAAATATCCCGCTATGGCGCTGGTCTCCACCTGATTCCCACCGGACGAACAGCGCGTCTCGAAGAGGAGAATG
GCGTACTGGTGGCCACCGGTGAGACCACGATCGACGATGAGGTCGTGTTCGGCCTTATCGATAGCGGCCGGAAGTGA

Structures

Toxin

• AlphaFold DB: G0TQ88

Antitoxin

• AlphaFold DB: G0TQ89