Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2868328..2868470 | Replicon | chromosome |
| Accession | NZ_LT992502 | ||
| Organism | Enterobacter bugandensis isolate EB-247 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2868332..2868435 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2868328..2868470 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG357_RS13925 | 2863503..2864951 | + | 1449 | WP_197710704.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DG357_RS13930 | 2865057..2865296 | + | 240 | WP_008500472.1 | YebV family protein | - |
| DG357_RS13935 | 2865331..2865975 | - | 645 | WP_041909471.1 | protein-serine/threonine phosphatase | - |
| DG357_RS13940 | 2866144..2867085 | + | 942 | WP_028013548.1 | VirK/YbjX family protein | - |
| DG357_RS13945 | 2867258..2868133 | + | 876 | WP_088205094.1 | benzoate transporter | - |
| - | 2868328..2868470 | + | 143 | - | - | Antitoxin |
| - | 2868332..2868435 | - | 104 | - | - | Toxin |
| DG357_RS13950 | 2868575..2868913 | - | 339 | WP_028013604.1 | YebY family protein | - |
| DG357_RS13955 | 2868930..2869799 | - | 870 | WP_088205057.1 | copper homeostasis membrane protein CopD | - |
| DG357_RS13960 | 2869801..2870172 | - | 372 | WP_045260311.1 | CopC domain-containing protein YobA | - |
| DG357_RS13965 | 2870309..2870539 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| DG357_RS13970 | 2870650..2871300 | + | 651 | WP_045260312.1 | carbon-nitrogen hydrolase family protein | - |
| DG357_RS13975 | 2871325..2871987 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T294427 NZ_LT992502:c2868435-2868332 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT294427 NZ_LT992502:2868328-2868470 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
