Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 845977..846505 | Replicon | chromosome |
| Accession | NZ_LT992491 | ||
| Organism | Vibrio cholerae strain 4295STDY6534200 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | H9L4R3 |
| Locus tag | HUW69_RS17495 | Protein ID | WP_000221352.1 |
| Coordinates | 846215..846505 (+) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | HUW69_RS17490 | Protein ID | WP_002029763.1 |
| Coordinates | 845977..846225 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUW69_RS17435 | 841376..841558 | - | 183 | WP_084998671.1 | DUF645 family protein | - |
| HUW69_RS17440 | 841927..842169 | + | 243 | WP_001107720.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HUW69_RS17445 | 842166..842465 | + | 300 | WP_000802134.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HUW69_RS19165 | 842642..842734 | - | 93 | Protein_738 | DUF645 family protein | - |
| HUW69_RS19170 | 842701..842823 | - | 123 | Protein_739 | DUF645 family protein | - |
| HUW69_RS17455 | 843180..843351 | - | 172 | Protein_740 | DUF645 family protein | - |
| HUW69_RS17460 | 843664..843951 | - | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HUW69_RS17465 | 843941..844192 | - | 252 | WP_001250180.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| HUW69_RS17470 | 844396..844815 | - | 420 | WP_029628772.1 | hypothetical protein | - |
| HUW69_RS17475 | 844833..844922 | - | 90 | WP_148528902.1 | hypothetical protein | - |
| HUW69_RS17480 | 844991..845359 | - | 369 | WP_029628726.1 | hypothetical protein | - |
| HUW69_RS17485 | 845370..845669 | - | 300 | WP_029628725.1 | hypothetical protein | - |
| HUW69_RS17490 | 845977..846225 | + | 249 | WP_002029763.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| HUW69_RS17495 | 846215..846505 | + | 291 | WP_000221352.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| HUW69_RS17500 | 846648..847187 | - | 540 | WP_029628805.1 | hydrolase | - |
| HUW69_RS17505 | 847348..847773 | - | 426 | WP_029628792.1 | hypothetical protein | - |
| HUW69_RS17510 | 848008..848526 | - | 519 | WP_029628793.1 | hypothetical protein | - |
| HUW69_RS17515 | 848701..849240 | - | 540 | WP_029628791.1 | hydrolase | - |
| HUW69_RS17520 | 849549..849776 | - | 228 | WP_001894457.1 | DUF1289 domain-containing protein | - |
| HUW69_RS17525 | 850091..850288 | - | 198 | WP_080006741.1 | DUF3709 domain-containing protein | - |
| HUW69_RS19175 | 850282..850443 | - | 162 | Protein_755 | hypothetical protein | - |
| HUW69_RS17535 | 850552..850854 | - | 303 | WP_000818171.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HUW69_RS17540 | 850842..851099 | - | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 806749..965214 | 158465 | |
| - | inside | Integron | - | - | 806749..961958 | 155209 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|