Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | rlegTA/AbiEii(toxin) |
Location | 3571838..3573365 | Replicon | chromosome |
Accession | NC_021172 | ||
Organism | Hyphomicrobium denitrificans 1NES1 |
Toxin (Protein)
Gene name | rlegT | Uniprot ID | N0BC13 |
Locus tag | HYPDE_RS17215 | Protein ID | WP_015599821.1 |
Coordinates | 3572448..3573365 (+) | Length | 306 a.a. |
Antitoxin (Protein)
Gene name | rlegA | Uniprot ID | N0BH83 |
Locus tag | HYPDE_RS17210 | Protein ID | WP_015599820.1 |
Coordinates | 3571838..3572458 (+) | Length | 207 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HYPDE_RS17185 | 3567089..3567283 | - | 195 | WP_015599814.1 | hypothetical protein | - |
HYPDE_RS17190 | 3567286..3567660 | - | 375 | WP_015599815.1 | hypothetical protein | - |
HYPDE_RS17195 | 3567671..3568150 | - | 480 | WP_015599816.1 | hypothetical protein | - |
HYPDE_RS17200 | 3568247..3570382 | - | 2136 | WP_015599817.1 | ParB/RepB/Spo0J family partition protein | - |
HYPDE_RS17205 | 3570572..3571531 | - | 960 | WP_015599818.1 | DUF1738 domain-containing protein | - |
HYPDE_RS17210 | 3571838..3572458 | + | 621 | WP_015599820.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin |
HYPDE_RS17215 | 3572448..3573365 | + | 918 | WP_015599821.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
HYPDE_RS17220 | 3573456..3573710 | + | 255 | WP_187290846.1 | hypothetical protein | - |
HYPDE_RS17225 | 3573707..3575659 | + | 1953 | WP_015599823.1 | NTPase KAP | - |
HYPDE_RS17230 | 3575659..3576546 | + | 888 | WP_015599824.1 | hypothetical protein | - |
HYPDE_RS17235 | 3576543..3577892 | + | 1350 | WP_015599825.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 306 a.a. Molecular weight: 33543.48 Da Isoelectric Point: 5.4721
>T29398 WP_015599821.1 NC_021172:3572448-3573365 [Hyphomicrobium denitrificans 1NES1]
MPREPRNIGASVRARLLDRARAERSDFQILLTRYALERLLYRLSISPHRDRFILKGAMLFVTWVADPFRPTRDLDLLGSG
DNGAEAIAETFRVICAQPVADDGVIFNVAALQAAPIREEVEYGGVRVRTTATIAGARIPIQVDVGFGDTVTPAPVEIDYP
TLLDAPAPHLRAYPIETVVAEKFEALVALGMANSRLKDFYDLWLIAHTFKFGRPALSKAVQRTFERRGTALPADIPVGLT
DEFAAAWAVQWRTLLTRERMAAAPEGFTTVIADLQDFLMPLLGGSNTESVWPAGGPWSLGASKDE
MPREPRNIGASVRARLLDRARAERSDFQILLTRYALERLLYRLSISPHRDRFILKGAMLFVTWVADPFRPTRDLDLLGSG
DNGAEAIAETFRVICAQPVADDGVIFNVAALQAAPIREEVEYGGVRVRTTATIAGARIPIQVDVGFGDTVTPAPVEIDYP
TLLDAPAPHLRAYPIETVVAEKFEALVALGMANSRLKDFYDLWLIAHTFKFGRPALSKAVQRTFERRGTALPADIPVGLT
DEFAAAWAVQWRTLLTRERMAAAPEGFTTVIADLQDFLMPLLGGSNTESVWPAGGPWSLGASKDE
Download Length: 918 bp
>T29398 NC_021172:3572448-3573365 [Hyphomicrobium denitrificans 1NES1]
ATGCCACGTGAGCCTCGCAATATTGGCGCGTCGGTGCGGGCCCGCCTGCTGGATCGGGCGCGCGCGGAGCGATCCGATTT
CCAGATTCTGCTGACGCGCTATGCGCTCGAGCGTCTGCTCTACCGGCTGAGCATTTCCCCCCATCGCGACCGCTTCATTC
TAAAGGGGGCGATGCTCTTTGTGACCTGGGTCGCCGATCCCTTCCGGCCGACTCGCGATCTCGACCTGCTCGGTTCTGGC
GACAATGGCGCCGAGGCGATCGCGGAAACCTTCCGCGTCATCTGCGCCCAGCCGGTCGCCGATGACGGTGTGATATTCAA
TGTCGCTGCGCTGCAGGCGGCGCCGATCCGCGAGGAAGTGGAATATGGCGGCGTACGGGTACGCACAACCGCGACGATCG
CCGGTGCGCGCATCCCAATTCAAGTTGATGTCGGCTTCGGCGATACCGTCACGCCGGCGCCGGTCGAGATCGACTATCCC
ACCTTGCTGGACGCCCCGGCACCGCATCTTCGAGCCTACCCGATCGAGACGGTGGTGGCGGAGAAATTTGAAGCCTTGGT
CGCGCTCGGCATGGCCAACAGCCGACTCAAGGATTTCTATGATCTTTGGCTGATTGCGCACACCTTCAAATTTGGGCGGC
CCGCACTTTCTAAAGCCGTGCAGCGCACATTCGAGCGGCGCGGCACAGCGCTCCCAGCCGATATTCCGGTTGGTTTGACG
GATGAATTCGCGGCGGCGTGGGCTGTCCAGTGGCGAACCTTGCTCACGCGCGAGCGCATGGCGGCGGCGCCAGAAGGATT
CACGACAGTCATCGCTGATCTTCAGGATTTCTTGATGCCGTTACTTGGTGGGTCAAACACAGAGTCGGTTTGGCCGGCCG
GCGGGCCATGGTCGCTCGGAGCATCGAAAGATGAATAG
ATGCCACGTGAGCCTCGCAATATTGGCGCGTCGGTGCGGGCCCGCCTGCTGGATCGGGCGCGCGCGGAGCGATCCGATTT
CCAGATTCTGCTGACGCGCTATGCGCTCGAGCGTCTGCTCTACCGGCTGAGCATTTCCCCCCATCGCGACCGCTTCATTC
TAAAGGGGGCGATGCTCTTTGTGACCTGGGTCGCCGATCCCTTCCGGCCGACTCGCGATCTCGACCTGCTCGGTTCTGGC
GACAATGGCGCCGAGGCGATCGCGGAAACCTTCCGCGTCATCTGCGCCCAGCCGGTCGCCGATGACGGTGTGATATTCAA
TGTCGCTGCGCTGCAGGCGGCGCCGATCCGCGAGGAAGTGGAATATGGCGGCGTACGGGTACGCACAACCGCGACGATCG
CCGGTGCGCGCATCCCAATTCAAGTTGATGTCGGCTTCGGCGATACCGTCACGCCGGCGCCGGTCGAGATCGACTATCCC
ACCTTGCTGGACGCCCCGGCACCGCATCTTCGAGCCTACCCGATCGAGACGGTGGTGGCGGAGAAATTTGAAGCCTTGGT
CGCGCTCGGCATGGCCAACAGCCGACTCAAGGATTTCTATGATCTTTGGCTGATTGCGCACACCTTCAAATTTGGGCGGC
CCGCACTTTCTAAAGCCGTGCAGCGCACATTCGAGCGGCGCGGCACAGCGCTCCCAGCCGATATTCCGGTTGGTTTGACG
GATGAATTCGCGGCGGCGTGGGCTGTCCAGTGGCGAACCTTGCTCACGCGCGAGCGCATGGCGGCGGCGCCAGAAGGATT
CACGACAGTCATCGCTGATCTTCAGGATTTCTTGATGCCGTTACTTGGTGGGTCAAACACAGAGTCGGTTTGGCCGGCCG
GCGGGCCATGGTCGCTCGGAGCATCGAAAGATGAATAG
Antitoxin
Download Length: 207 a.a. Molecular weight: 23351.16 Da Isoelectric Point: 9.9356
>AT29398 WP_015599820.1 NC_021172:3571838-3572458 [Hyphomicrobium denitrificans 1NES1]
MTSANAQRVRALDLLKSRGMLRQKDFMAEGIGPETLARLVREAAVVRPARGLYQLPDTQIEAAHMLAEAAVLVPKGVVCL
TSALQYHELTLQMPSAVWMAIERTAWRPKIDYPRIRFVRFTGSALTEGVERHRVENIEVPITDPARTIVDCFRYRAKVGL
DVAMEGLREGLRRQRCTPDDLWRYARTARVWSVMRPYVEAMAADAT
MTSANAQRVRALDLLKSRGMLRQKDFMAEGIGPETLARLVREAAVVRPARGLYQLPDTQIEAAHMLAEAAVLVPKGVVCL
TSALQYHELTLQMPSAVWMAIERTAWRPKIDYPRIRFVRFTGSALTEGVERHRVENIEVPITDPARTIVDCFRYRAKVGL
DVAMEGLREGLRRQRCTPDDLWRYARTARVWSVMRPYVEAMAADAT
Download Length: 621 bp
>AT29398 NC_021172:3571838-3572458 [Hyphomicrobium denitrificans 1NES1]
ATGACATCGGCGAACGCCCAGCGAGTTCGTGCCCTAGATCTCTTGAAGTCGCGGGGAATGCTCCGCCAGAAGGACTTCAT
GGCCGAAGGCATTGGCCCGGAGACGCTCGCCCGTCTCGTACGGGAGGCGGCGGTCGTGCGTCCGGCCCGGGGCCTCTATC
AGCTCCCGGACACCCAGATCGAGGCGGCCCACATGCTTGCCGAAGCCGCCGTGCTGGTTCCCAAAGGGGTCGTCTGCCTG
ACCTCGGCGCTTCAATATCATGAACTGACGCTGCAGATGCCGTCAGCCGTATGGATGGCGATCGAGCGTACCGCCTGGCG
GCCGAAGATCGACTATCCGCGCATCCGCTTCGTGCGCTTCACCGGATCGGCGCTGACCGAGGGGGTTGAGCGTCATCGCG
TCGAGAACATCGAGGTCCCCATCACGGATCCGGCGCGGACCATCGTCGACTGTTTCCGCTACCGGGCCAAGGTCGGCCTC
GATGTCGCCATGGAAGGACTTCGCGAAGGCCTCCGCCGCCAGCGATGTACACCTGATGATCTGTGGCGTTACGCGCGAAC
GGCGCGGGTCTGGTCAGTGATGCGCCCTTACGTCGAAGCGATGGCGGCCGATGCCACGTGA
ATGACATCGGCGAACGCCCAGCGAGTTCGTGCCCTAGATCTCTTGAAGTCGCGGGGAATGCTCCGCCAGAAGGACTTCAT
GGCCGAAGGCATTGGCCCGGAGACGCTCGCCCGTCTCGTACGGGAGGCGGCGGTCGTGCGTCCGGCCCGGGGCCTCTATC
AGCTCCCGGACACCCAGATCGAGGCGGCCCACATGCTTGCCGAAGCCGCCGTGCTGGTTCCCAAAGGGGTCGTCTGCCTG
ACCTCGGCGCTTCAATATCATGAACTGACGCTGCAGATGCCGTCAGCCGTATGGATGGCGATCGAGCGTACCGCCTGGCG
GCCGAAGATCGACTATCCGCGCATCCGCTTCGTGCGCTTCACCGGATCGGCGCTGACCGAGGGGGTTGAGCGTCATCGCG
TCGAGAACATCGAGGTCCCCATCACGGATCCGGCGCGGACCATCGTCGACTGTTTCCGCTACCGGGCCAAGGTCGGCCTC
GATGTCGCCATGGAAGGACTTCGCGAAGGCCTCCGCCGCCAGCGATGTACACCTGATGATCTGTGGCGTTACGCGCGAAC
GGCGCGGGTCTGGTCAGTGATGCGCCCTTACGTCGAAGCGATGGCGGCCGATGCCACGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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