Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3573868..3574071 | Replicon | chromosome |
| Accession | NZ_LT991954 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii isolate C309 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3573875..3573978 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3573868..3574071 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBR08_RS17440 | 3570222..3570437 | + | 216 | WP_063844398.1 | hypothetical protein | - |
| DBR08_RS17445 | 3570437..3570733 | + | 297 | WP_063844396.1 | DUF4406 domain-containing protein | - |
| DBR08_RS17450 | 3570730..3570921 | + | 192 | WP_063844395.1 | DUF1382 family protein | - |
| DBR08_RS17455 | 3571013..3571231 | + | 219 | WP_063844394.1 | TraR/DksA family transcriptional regulator | - |
| DBR08_RS17460 | 3571231..3571743 | + | 513 | WP_063844393.1 | class I SAM-dependent methyltransferase | - |
| DBR08_RS17465 | 3571706..3571945 | + | 240 | WP_039025583.1 | DUF4222 domain-containing protein | - |
| DBR08_RS17470 | 3571955..3572311 | + | 357 | WP_063844391.1 | DUF551 domain-containing protein | - |
| DBR08_RS17475 | 3572471..3572743 | + | 273 | WP_023300430.1 | hypothetical protein | - |
| DBR08_RS17480 | 3572712..3573797 | + | 1086 | WP_063844390.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3573868..3574071 | + | 204 | - | - | Antitoxin |
| - | 3573875..3573978 | - | 104 | - | - | Toxin |
| DBR08_RS17485 | 3574120..3574458 | - | 339 | WP_003859787.1 | YebY family protein | - |
| DBR08_RS17490 | 3574475..3575344 | - | 870 | WP_045341273.1 | copper homeostasis membrane protein CopD | - |
| DBR08_RS17495 | 3575346..3575717 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| DBR08_RS17500 | 3575855..3576085 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| DBR08_RS17505 | 3576197..3576847 | + | 651 | WP_045341276.1 | carbon-nitrogen hydrolase family protein | - |
| DBR08_RS17510 | 3576872..3577534 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 3503825..3594816 | 90991 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293976 NZ_LT991954:c3573978-3573875 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT293976 NZ_LT991954:3573868-3574071 [Enterobacter hormaechei subsp. steigerwaltii]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
