Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PfiT-PfiA/ParE(toxin)
Location 135132..135743 Replicon chromosome
Accession NZ_LT985192
Organism Pseudomonas syringae strain CFBP 2116

Toxin (Protein)


Gene name PfiT Uniprot ID A0A2G4CXS4
Locus tag DTQ61_RS00725 Protein ID WP_057456423.1
Coordinates 135393..135743 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID -
Locus tag DTQ61_RS00720 Protein ID WP_057432311.1
Coordinates 135132..135380 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DTQ61_RS00705 130981..132900 + 1920 WP_060403782.1 response regulator -
DTQ61_RS00710 133314..133646 + 333 WP_060403781.1 hypothetical protein -
DTQ61_RS00715 133831..134793 - 963 WP_060403780.1 tyrosine-type recombinase/integrase -
DTQ61_RS00720 135132..135380 + 249 WP_057432311.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DTQ61_RS00725 135393..135743 + 351 WP_057456423.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DTQ61_RS00730 135850..136254 - 405 WP_057456424.1 hypothetical protein -
DTQ61_RS00735 136244..139066 - 2823 WP_060403779.1 RHS repeat protein -
DTQ61_RS00740 139063..139854 - 792 WP_057431753.1 RHS repeat protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 111390..159731 48341


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12901.70 Da        Isoelectric Point: 4.1824

>T293964 WP_057456423.1 NZ_LT985192:135393-135743 [Pseudomonas syringae]
MNTFALRFTDLAQQSLEDQVEHLAVTQGFSSAAQRIDSLIDAIQDKLLSTPLGYPVSPQLSELGVLHYRELNTDGYRIFY
EVMDSDGITDIAVLLVLGGKQSVEQALIRYCLLQPI

Download         Length: 351 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9343.74 Da        Isoelectric Point: 9.8452

>AT293964 WP_057432311.1 NZ_LT985192:135132-135380 [Pseudomonas syringae]
MRVETISYLKRNAADLPLDEPLIVTQNGVPAYVVESYADRKRRDEAIALVKLLAISSREYAQGKHCSTDELKARLSRRFA
HK

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2G4CXS4

Antitoxin

Source ID Structure

References