293931

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PfiT-PfiA/ParE(toxin)
Location 5870105..5870716 Replicon chromosome
Accession NZ_LT963409
Organism Pseudomonas syringae isolate CFBP3840

Toxin (Protein)


Gene name PfiT Uniprot ID A0A2G4CXS4
Locus tag C6H39_RS27970 Protein ID WP_057456423.1
Coordinates 5870105..5870455 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID -
Locus tag C6H39_RS27975 Protein ID WP_057432311.1
Coordinates 5870468..5870716 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C6H39_RS27955 5865994..5866785 + 792 WP_057431753.1 RHS repeat protein -
C6H39_RS27960 5866782..5869604 + 2823 WP_060403779.1 RHS repeat protein -
C6H39_RS27965 5869594..5869998 + 405 WP_057456424.1 hypothetical protein -
C6H39_RS27970 5870105..5870455 - 351 WP_057456423.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C6H39_RS27975 5870468..5870716 - 249 WP_057432311.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
C6H39_RS27980 5871055..5872017 + 963 WP_060403780.1 tyrosine-type recombinase/integrase -
C6H39_RS27985 5872202..5872534 - 333 WP_060403781.1 hypothetical protein -
C6H39_RS27990 5872948..5874867 - 1920 WP_060403782.1 response regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12901.70 Da        Isoelectric Point: 4.1824

>T293931 WP_057456423.1 NZ_LT963409:c5870455-5870105 [Pseudomonas syringae]
MNTFALRFTDLAQQSLEDQVEHLAVTQGFSSAAQRIDSLIDAIQDKLLSTPLGYPVSPQLSELGVLHYRELNTDGYRIFY
EVMDSDGITDIAVLLVLGGKQSVEQALIRYCLLQPI

Download         Length: 351 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9343.74 Da        Isoelectric Point: 9.8452

>AT293931 WP_057432311.1 NZ_LT963409:c5870716-5870468 [Pseudomonas syringae]
MRVETISYLKRNAADLPLDEPLIVTQNGVPAYVVESYADRKRRDEAIALVKLLAISSREYAQGKHCSTDELKARLSRRFA
HK

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2G4CXS4

Antitoxin

Source ID Structure

References