Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 3913121..3913631 Replicon chromosome
Accession NZ_LT963402
Organism Pseudomonas syringae pv. avii isolate CFBP3846

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag C6H38_RS18545 Protein ID WP_080439383.1
Coordinates 3913350..3913631 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S6UR83
Locus tag C6H38_RS18540 Protein ID WP_005740683.1
Coordinates 3913121..3913360 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C6H38_RS18515 3909296..3910081 + 786 WP_060413609.1 hypothetical protein -
C6H38_RS18520 3910208..3911116 - 909 WP_054089894.1 DUF808 domain-containing protein -
C6H38_RS18530 3911264..3911770 - 507 WP_024666116.1 winged helix-turn-helix transcriptional regulator -
C6H38_RS18535 3911936..3912952 + 1017 WP_003376162.1 1-aminocyclopropane-1-carboxylate deaminase -
C6H38_RS18540 3913121..3913360 + 240 WP_005740683.1 ribbon-helix-helix protein, CopG family Antitoxin
C6H38_RS18545 3913350..3913631 + 282 WP_080439383.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C6H38_RS18550 3913670..3914525 - 856 Protein_3447 LysR family transcriptional regulator -
C6H38_RS18555 3914600..3915532 + 933 WP_060413608.1 DMT family transporter -
C6H38_RS18560 3915561..3917489 - 1929 WP_058418816.1 methyl-accepting chemotaxis protein -
C6H38_RS18565 3917741..3918226 - 486 WP_007245243.1 DUF2269 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-89)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-40)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10643.31 Da        Isoelectric Point: 10.0884

>T293911 WP_080439383.1 NZ_LT963402:3913350-3913631 [Pseudomonas syringae pv. avii]
MQVEWLKTALKNLDDEAAYISLENPAAAVAFVEAIQISVKQLASFPALGREGRIAGTREWPLPDWPYLIPYRIRNGRLQV
LRNFHTRRQSPLV

Download         Length: 282 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8753.90 Da        Isoelectric Point: 4.5822

>AT293911 WP_005740683.1 NZ_LT963402:3913121-3913360 [Pseudomonas syringae pv. avii]
MSVMSLRLPDEMADTLAHLAKATGRSKSFLALNALREYLTREAWQIAEIQRAIEEADAGEFASEEDVKAVMNKWANNAG

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A0K8M7Q4

References