Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 272976..273523 | Replicon | chromosome |
Accession | NZ_LT963402 | ||
Organism | Pseudomonas syringae pv. avii isolate CFBP3846 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A3M4CHK7 |
Locus tag | C6H38_RS01470 | Protein ID | WP_060413327.1 |
Coordinates | 272976..273251 (-) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A2K4TEH3 |
Locus tag | C6H38_RS01475 | Protein ID | WP_060413326.1 |
Coordinates | 273251..273523 (-) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C6H38_RS01420 | 268154..268618 | + | 465 | Protein_263 | recombinase family protein | - |
C6H38_RS01425 | 268711..268989 | + | 279 | WP_024661522.1 | hypothetical protein | - |
C6H38_RS01430 | 269040..269225 | + | 186 | WP_005730485.1 | hypothetical protein | - |
C6H38_RS01435 | 269215..269487 | + | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
C6H38_RS01440 | 269591..270304 | + | 714 | WP_104698102.1 | UPF0149 family protein | - |
C6H38_RS01445 | 270741..271454 | - | 714 | WP_099264817.1 | UPF0149 family protein | - |
C6H38_RS01450 | 271558..271830 | - | 273 | WP_057446608.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
C6H38_RS01455 | 271820..272005 | - | 186 | WP_005730485.1 | hypothetical protein | - |
C6H38_RS01460 | 272056..272334 | - | 279 | WP_024661522.1 | hypothetical protein | - |
C6H38_RS01465 | 272427..272891 | - | 465 | Protein_272 | recombinase family protein | - |
C6H38_RS01470 | 272976..273251 | - | 276 | WP_060413327.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C6H38_RS01475 | 273251..273523 | - | 273 | WP_060413326.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
C6H38_RS01480 | 273720..274340 | + | 621 | WP_005747119.1 | recombinase family protein | - |
C6H38_RS01490 | 274666..274887 | - | 222 | WP_003381774.1 | hypothetical protein | - |
C6H38_RS01495 | 274925..275338 | - | 414 | WP_060402542.1 | TraR/DksA family transcriptional regulator | - |
C6H38_RS01500 | 275374..275598 | - | 225 | WP_060402543.1 | carbon storage regulator | - |
C6H38_RS01505 | 275873..276850 | + | 978 | WP_020306143.1 | IS5 family transposase | - |
C6H38_RS01510 | 276980..277417 | - | 438 | Protein_280 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10753.26 Da Isoelectric Point: 7.0128
>T293909 WP_060413327.1 NZ_LT963402:c273251-272976 [Pseudomonas syringae pv. avii]
MELKWTSKALSDITRLYEFLASVNQPAAARAVQQLTTAPTTLLTNPRIGERLEEFEPRDVRRIQIGQYEMRYEIADSTIY
LLRLWHTREDR
MELKWTSKALSDITRLYEFLASVNQPAAARAVQQLTTAPTTLLTNPRIGERLEEFEPRDVRRIQIGQYEMRYEIADSTIY
LLRLWHTREDR
Download Length: 276 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3M4CHK7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2K4TEH3 |