Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE-RHH |
Location | 9165..9712 | Replicon | plasmid PP6 |
Accession | NZ_LT963401 | ||
Organism | Pseudomonas cerasi isolate PL963 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A193SHA4 |
Locus tag | C6H34_RS30150 | Protein ID | WP_057425920.1 |
Coordinates | 9437..9712 (+) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | H1ZWV1 |
Locus tag | C6H34_RS30145 | Protein ID | WP_015060662.1 |
Coordinates | 9165..9437 (+) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C6H34_RS30115 | 4274..6304 | + | 2031 | WP_065348591.1 | hypothetical protein | - |
C6H34_RS30120 | 6863..7027 | + | 165 | Protein_6 | IS5/IS1182 family transposase | - |
C6H34_RS30125 | 7025..7213 | - | 189 | Protein_7 | DUF4158 domain-containing protein | - |
C6H34_RS30130 | 7217..7777 | - | 561 | WP_065348730.1 | recombinase family protein | - |
C6H34_RS30135 | 7886..8317 | - | 432 | WP_065348729.1 | DUF1198 family protein | - |
C6H34_RS30140 | 8400..8918 | - | 519 | WP_083188299.1 | GNAT family N-acetyltransferase | - |
C6H34_RS30145 | 9165..9437 | + | 273 | WP_015060662.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
C6H34_RS30150 | 9437..9712 | + | 276 | WP_057425920.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C6H34_RS30155 | 9796..10032 | + | 237 | Protein_13 | recombinase family protein | - |
C6H34_RS30160 | 10128..10400 | + | 273 | WP_065348728.1 | arylsulfatase regulator | - |
C6H34_RS30165 | 10613..11287 | + | 675 | WP_080269136.1 | MobA/MobL family protein | - |
C6H34_RS30170 | 11284..11811 | - | 528 | WP_003348567.1 | hypothetical protein | - |
C6H34_RS30175 | 11979..13001 | + | 1023 | WP_002551322.1 | IS21-like element ISPsy4 family transposase | - |
C6H34_RS30180 | 12998..13792 | + | 795 | Protein_18 | IS21-like element helper ATPase IstB | - |
C6H34_RS30185 | 13926..14219 | - | 294 | WP_003348565.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..18360 | 18360 | |
- | inside | IScluster/Tn | - | - | 7217..13537 | 6320 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A193SHA4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3M4CJB9 |