293860

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbE-relB/ParE-YafN
Location 4528936..4529461 Replicon chromosome
Accession NZ_LT962480
Organism Pseudomonas syringae pv. syringae isolate CFBP4215

Toxin (Protein)


Gene name stbE Uniprot ID Q4ZPQ9
Locus tag PL963_RS20280 Protein ID WP_011268681.1
Coordinates 4529171..4529461 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q4ZPR0
Locus tag PL963_RS20275 Protein ID WP_003402372.1
Coordinates 4528936..4529181 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PL963_RS20270 4524851..4528762 - 3912 WP_104684487.1 ATP-dependent RNA helicase HrpA -
PL963_RS20275 4528936..4529181 + 246 WP_003402372.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
PL963_RS20280 4529171..4529461 + 291 WP_011268681.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PL963_RS20285 4529779..4531470 - 1692 WP_104684488.1 long-chain-fatty-acid--CoA ligase FadD1 -
PL963_RS20295 4531826..4533514 - 1689 WP_104684489.1 long-chain-fatty-acid--CoA ligase FadD2 -
PL963_RS20305 4533883..4534353 + 471 WP_003402365.1 MaoC family dehydratase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-81)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-71)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11010.01 Da        Isoelectric Point: 10.7294

>T293860 WP_011268681.1 NZ_LT962480:4529171-4529461 [Pseudomonas syringae pv. syringae]
MTFKLEFLPSALKEWEKLGHTIRVQLKKKLLERLGLPRIPGDALHGMPDHYKIKLRSAGYRLVYRVEEDRVVVTVVAVGK
RERGNIYDSAKGRLGP

Download         Length: 291 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8827.22 Da        Isoelectric Point: 4.5349

>AT293860 WP_003402372.1 NZ_LT962480:4528936-4529181 [Pseudomonas syringae pv. syringae]
MQSILADVAVSVSELKKNPSAVLSGAHGLPVAVLNHNKVMGYMVPAEVFEAMMERLDDLDLAELIKSRQHEKPVSVDIDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q4ZPQ9

Antitoxin

Source ID Structure
AlphaFold DB A0A3M2V2W1

References