Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 4278051..4278594 Replicon chromosome
Accession NZ_LT907988
Organism Orrella dioscoreae isolate Orrdi1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag ODI_RS19635 Protein ID WP_067754198.1
Coordinates 4278051..4278332 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag ODI_RS19640 Protein ID WP_067754195.1
Coordinates 4278391..4278594 (-) Length 68 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ODI_RS19610 4273867..4274145 + 279 WP_067754214.1 hypothetical protein -
ODI_RS19615 4274106..4274720 + 615 WP_067754211.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
ODI_RS19620 4274770..4275390 + 621 WP_067754206.1 glutathione S-transferase -
ODI_RS19625 4275642..4276205 + 564 WP_067754205.1 peroxiredoxin -
ODI_RS19630 4276363..4277955 + 1593 WP_067754203.1 alkyl hydroperoxide reductase subunit F -
ODI_RS19635 4278051..4278332 - 282 WP_067754198.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
ODI_RS19640 4278391..4278594 - 204 WP_067754195.1 hypothetical protein Antitoxin
ODI_RS19645 4278739..4280655 - 1917 WP_067754192.1 molecular chaperone HtpG -
ODI_RS19655 4281049..4282152 + 1104 WP_067754189.1 site-specific integrase -
ODI_RS19660 4282319..4283374 - 1056 WP_067754187.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-85)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10515.32 Da        Isoelectric Point: 11.2805

>T293819 WP_067754198.1 NZ_LT907988:c4278332-4278051 [Orrella dioscoreae]
MLPVQWRASARADLMAILAFITEDSPGAARKMKRLVSEATLSAARHPEWFRPGRVAGTRELVISANYILVYRVMVTHLEV
VSVLHARREYPRG

Download         Length: 282 bp

Antitoxin


Download         Length: 68 a.a.        Molecular weight: 7337.14 Da        Isoelectric Point: 5.4667

>AT293819 WP_067754195.1 NZ_LT907988:c4278594-4278391 [Orrella dioscoreae]
MSPLLKSSRRSASSADAQAISHDHWFRARVEASLADPRPLASHDDVMAEVDVLIDTLEADSPHLSQK

Download         Length: 204 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References