Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hipBA/HipA-HipB
Location 67637..69174 Replicon chromosome
Accession NZ_LT906476
Organism Legionella pneumophila strain NCTC11286

Toxin (Protein)


Gene name hipA Uniprot ID -
Locus tag CKV96_RS00330 Protein ID WP_032829405.1
Coordinates 67637..68941 (-) Length 435 a.a.

Antitoxin (Protein)


Gene name hipB Uniprot ID -
Locus tag CKV96_RS00335 Protein ID WP_014840730.1
Coordinates 68935..69174 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CKV96_RS00300 63122..63841 + 720 WP_014843028.1 C39 family peptidase -
CKV96_RS00305 63877..64437 + 561 WP_011212702.1 hypothetical protein -
CKV96_RS15690 64545..64706 + 162 WP_015444967.1 hypothetical protein -
CKV96_RS00310 64743..65147 - 405 WP_011212703.1 MerR family transcriptional regulator -
CKV96_RS00315 65217..65969 + 753 WP_027224671.1 glutaredoxin family protein -
CKV96_RS00320 66159..67250 + 1092 WP_027224672.1 hypothetical protein -
CKV96_RS00325 67292..67567 + 276 Protein_62 integrase -
CKV96_RS00330 67637..68941 - 1305 WP_032829405.1 type II toxin-antitoxin system HipA family toxin Toxin
CKV96_RS00335 68935..69174 - 240 WP_014840730.1 helix-turn-helix domain-containing protein Antitoxin
CKV96_RS00340 69541..69905 + 365 Protein_65 protein LvrA -
CKV96_RS00345 70015..70287 + 273 WP_032829407.1 hypothetical protein -
CKV96_RS00355 70982..72394 - 1413 WP_027224675.1 hypothetical protein -
CKV96_RS00360 72425..73033 - 609 WP_027224676.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA, N-terminal subdomain 1

(5-106)

Antitoxin

Cro/C1-type helix-turn-helix domain

(13-65)


Sequences

Toxin        


Download         Length: 435 a.a.        Molecular weight: 49704.13 Da        Isoelectric Point: 8.2954

>T293762 WP_032829405.1 NZ_LT906476:c68941-67637 [Legionella pneumophila]
MVMRKLYILMNNELVGELTQDNAGGLSFSYVADWISKPHSRPVSLSLPLVNQKFSGEVVYNFFDNLLPDNPQIRARIQAR
FQAKSSRPFDLLALIGSDCVGAIQIVERIPQTQRLSIESHVVSEAEIARTLRSYQTSPLGMDKEDDEFRISIAGAQEKTA
FLYYQNEWHKPFGPTPTTHIFKLPIGYLPHQGIDLSESCENEHLCLLLASKFGLDVAKSKILQFEDEKVLVVERFDRKWS
RDNRYILRLPQEDLCQALGYSPNLKYQSDGGPGIKEIMQLLNGSQQPQKDRDEFFRAQVVYWCLGAIDAHAKNFSISIQP
QGGYQLTPLYDIISAYPIVEQKQLSFKKLKMAMALYGKNIHYKIDGIQKRHFIETAKYVKYSKIKAAQIFEQVIDRIDSA
IDEVSRQLPNHFPEKIADPIFKGMRAFKERMIST

Download         Length: 1305 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9096.40 Da        Isoelectric Point: 5.0774

>AT293762 WP_014840730.1 NZ_LT906476:c69174-68935 [Legionella pneumophila]
MIISSAKDLALYLNDKRKQLKMSQSEVADLVGLKQDTISKFENSPDNSRIDTLFRILSALNLNMSLVEKDQKTHEEIEW

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References