Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4021756..4022272 Replicon chromosome
Accession NZ_LT905060
Organism Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083

Toxin (Protein)


Gene name relE Uniprot ID C0Q7A9
Locus tag CJZ88_RS19765 Protein ID WP_000220578.1
Coordinates 4021756..4022040 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID V7ISI8
Locus tag CJZ88_RS19770 Protein ID WP_000212724.1
Coordinates 4022030..4022272 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CJZ88_RS19750 4016968..4018620 + 1653 WP_000155051.1 alpha,alpha-phosphotrehalase -
CJZ88_RS19755 4019029..4021167 + 2139 WP_000187820.1 anaerobic ribonucleoside-triphosphate reductase -
CJZ88_RS19760 4021288..4021752 + 465 WP_001268860.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
CJZ88_RS19765 4021756..4022040 - 285 WP_000220578.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CJZ88_RS19770 4022030..4022272 - 243 WP_000212724.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
CJZ88_RS19775 4022350..4024263 - 1914 WP_001212152.1 BglG family transcription antiterminator -
CJZ88_RS19780 4024280..4025020 - 741 WP_000779260.1 KDGP aldolase family protein -
CJZ88_RS19785 4025017..4026135 - 1119 WP_001139189.1 DgaE family pyridoxal phosphate-dependent ammonia lyase -
CJZ88_RS19790 4026119..4027252 - 1134 WP_000459938.1 amidohydrolase/deacetylase family metallohydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-83)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-80)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10854.67 Da        Isoelectric Point: 10.0482

>T293667 WP_000220578.1 NZ_LT905060:c4022040-4021756 [Salmonella enterica subsp. enterica serovar Typhi]
MTYELEFDPRALKEWHKLGDTVKAQLKKKLADVLLNPRIDSARLNGLPDCYKIKLKSSGYRLVYQVRDDVVIVFVVAVGK
REHSAVYHDANKRL

Download         Length: 285 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8961.34 Da        Isoelectric Point: 5.0651

>AT293667 WP_000212724.1 NZ_LT905060:c4022272-4022030 [Salmonella enterica subsp. enterica serovar Typhi]
MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVTLSDSEDALIQTVRERLSSPQKGIKVSLDDL

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3Z1E876

Antitoxin

Source ID Structure
AlphaFold DB A0A5H5JRI5

References