Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2839879..2840147 | Replicon | chromosome |
| Accession | NZ_LT903847 | ||
| Organism | Escherichia coli O127:H6 isolate EPEC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2840007..2840109 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2839879..2840147 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BQ9550_RS14780 | 2836432..2837094 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| BQ9550_RS14785 | 2837118..2837774 | - | 657 | WP_000011646.1 | carbon-nitrogen hydrolase family protein | - |
| BQ9550_RS14790 | 2837876..2838106 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BQ9550_RS14795 | 2838245..2838619 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| BQ9550_RS14800 | 2838623..2839495 | + | 873 | WP_000879263.1 | copper homeostasis membrane protein CopD | - |
| BQ9550_RS14805 | 2839508..2839849 | + | 342 | WP_000976470.1 | YebY family protein | - |
| - | 2839879..2840147 | - | 269 | - | - | Antitoxin |
| - | 2840007..2840109 | + | 103 | - | - | Toxin |
| BQ9550_RS14810 | 2840244..2840900 | + | 657 | WP_000812706.1 | protein-serine/threonine phosphatase | - |
| BQ9550_RS14815 | 2840901..2841092 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BQ9550_RS14820 | 2841197..2841433 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BQ9550_RS14825 | 2841551..2842990 | - | 1440 | WP_001339709.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T293646 NZ_LT903847:2840007-2840109 [Escherichia coli O127:H6]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT293646 NZ_LT903847:c2840147-2839879 [Escherichia coli O127:H6]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
