Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PP_4151-4152/excise(antitoxin)
Location 7510956..7511976 Replicon chromosome
Accession NZ_LT859959
Organism Bradyrhizobium sp. ORS 285

Toxin (Protein)


Gene name PP_4152 Uniprot ID -
Locus tag BRAD285_RS33815 Protein ID WP_035646931.1
Coordinates 7510956..7511534 (-) Length 193 a.a.

Antitoxin (Protein)


Gene name PP_4151 Uniprot ID -
Locus tag BRAD285_RS33820 Protein ID WP_035646914.1
Coordinates 7511530..7511976 (-) Length 149 a.a.

Genomic Context

BRAD285_RS33795BRAD285_RS33800BRAD285_RS33830BRAD285_RS33805BRAD285_RS33810BRAD285_RS33815BRAD285_RS33820BRAD285_RS33825BRAD285_RS33835
Location: 7506035..7506358 (324 bp)
Type: Others
Protein ID: WP_006612657.1
Location: 7506392..7507348 (957 bp)
Type: Others
Protein ID: WP_006612656.1
Location: 7513921..7514991 (1071 bp)
Type: Others
Protein ID: WP_006612650.1
Location: 7507965..7510205 (2241 bp)
Type: Others
Protein ID: WP_006612655.1
Location: 7510340..7510819 (480 bp)
Type: Others
Protein ID: WP_035646916.1
Location: 7510956..7511534 (579 bp)
Type: Toxin
Protein ID: WP_035646931.1
Location: 7511530..7511976 (447 bp)
Type: Antitoxin
Protein ID: WP_035646914.1
Location: 7512156..7513694 (1539 bp)
Type: Others
Protein ID: WP_006612651.1
Location: 7515007..7515780 (774 bp)
Type: Others
Protein ID: WP_087877739.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BRAD285_RS337957506035..7506358+324WP_006612657.1phosphoribosyl-ATP diphosphatase-
BRAD285_RS338007506392..7507348+957WP_006612656.1type I pantothenate kinase-
BRAD285_RS338057507965..7510205-2241WP_006612655.1response regulator-
BRAD285_RS338107510340..7510819-480WP_035646916.1hypothetical protein-
BRAD285_RS338157510956..7511534-579WP_035646931.1PIN domain-containing proteinToxin
BRAD285_RS338207511530..7511976-447WP_035646914.1helix-turn-helix domain-containing proteinAntitoxin
BRAD285_RS338257512156..7513694-1539WP_006612651.1YifB family Mg chelatase-like AAA ATPase-
BRAD285_RS338307513921..7514991+1071WP_006612650.1DUF2336 domain-containing protein-
BRAD285_RS338357515007..7515780-774WP_087877739.1outer membrane lipoprotein carrier protein LolA-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(9-116)

Antitoxin

Helix-turn-helix domain, group 17

(77-123)


Sequences

Toxin        


Download         Length: 193 a.a.        Molecular weight: 21778.00 Da        Isoelectric Point: 6.3290

>T293584 WP_035646931.1 NZ_LT859959:c7511534-7510956 [Bradyrhizobium sp. ORS 285]
ISNHSRYTVILDACTLYPAPLRDLLMETASMGLFRAKWSDRIHDEWISNLLAKRPDLDLAKLERTRHLMNNAVPDCLVTG
YESIIDALDLPDEDDRHVLAAGIHCGADAIVTFNVKDFPVETLAIHHIEPQHPDEFLVHQFGLNEAAVLNAARRCRLRLK
RNPRDAIQYLLALERCGLPQTVAHLRAYSEVI

Download         Length: 579 bp

Antitoxin


Download         Length: 149 a.a.        Molecular weight: 16784.17 Da        Isoelectric Point: 6.6512

>AT293584 WP_035646914.1 NZ_LT859959:c7511976-7511530 [Bradyrhizobium sp. ORS 285]
MSARDLERPITLPSKEDTALAQEASRAIATKQPSELKVRLDDGQELTLPKAATRLIAHLLTEMAQGNAVTIIPIHAVLTT
QEAADYLNVSRPHLVSLLEEKRIPYHKVGTHRRVRFQDLVDYRAAFEKRRREIMEELAAQAEQEDMGY

Download         Length: 447 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References