Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) EcnAB/-
Location 3990879..3991245 Replicon chromosome
Accession NZ_LT853882
Organism Xanthomonas fragariae strain PD885

Toxin (Protein)


Gene name EcnB Uniprot ID A0A1Y6HEL5
Locus tag PD885_RS18545 Protein ID WP_002809516.1
Coordinates 3991111..3991245 (+) Length 45 a.a.

Antitoxin (Protein)


Gene name EcnA Uniprot ID A0A1Y6GQE1
Locus tag PD885_RS18540 Protein ID WP_002809518.1
Coordinates 3990879..3991031 (+) Length 51 a.a.

Genomic Context

PD885_RS18520PD885_RS18535PD885_RS18540PD885_RS18545PD885_RS18550PD885_RS18555PD885_RS18560PD885_RS18565PD885_RS18515PD885_RS18525PD885_RS18530PD885_RS18570
Location: 3987030..3987828 (799 bp)
Type: Others
Protein ID: WP_088057049.1
Location: 3989847..3990770 (924 bp)
Type: Others
Protein ID: WP_002809521.1
Location: 3990879..3991031 (153 bp)
Type: Antitoxin
Protein ID: WP_002809518.1
Location: 3991111..3991245 (135 bp)
Type: Toxin
Protein ID: WP_002809516.1
Location: 3991573..3992862 (1290 bp)
Type: Others
Protein ID: WP_002809514.1
Location: 3993045..3993245 (201 bp)
Type: Others
Protein ID: Protein_3569
Location: 3993406..3994011 (606 bp)
Type: Others
Protein ID: Protein_3570
Location: 3994027..3994936 (910 bp)
Type: Others
Protein ID: Protein_3571
Location: 3986217..3986563 (347 bp)
Type: Others
Protein ID: Protein_3561
Location: 3988843..3989073 (231 bp)
Type: Others
Protein ID: Protein_3563
Location: 3989096..3989489 (394 bp)
Type: Others
Protein ID: Protein_3564
Location: 3994996..3996111 (1116 bp)
Type: Others
Protein ID: WP_088057050.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PD885_RS185153986217..3986563-347Protein_3561hypothetical protein-
PD885_RS185203987030..3987828+799WP_088057049.1IS5 family transposase-
PD885_RS185253988843..3989073-231Protein_3563GTPase-
PD885_RS185303989096..3989489-394Protein_3564roadblock/LC7 domain-containing protein-
PD885_RS185353989847..3990770+924WP_002809521.1arginase-
PD885_RS185403990879..3991031+153WP_002809518.1entericidin A/B family lipoproteinAntitoxin
PD885_RS185453991111..3991245+135WP_002809516.1entericidin A/B family lipoproteinToxin
PD885_RS185503991573..3992862+1290WP_002809514.1tryptophan--tRNA ligase-
PD885_RS185553993045..3993245+201Protein_3569peptidase M20-
PD885_RS185603993406..3994011+606Protein_3570drug/metabolite exporter YedA-
PD885_RS185653994027..3994936+910Protein_3571EamA family transporter RarD-
PD885_RS185703994996..3996111-1116WP_088057050.1alpha/beta fold hydrolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Entericidin A/B

(23-42)

Antitoxin

Entericidin A/B

(23-42)


Sequences

Toxin        


Download         Length: 45 a.a.        Molecular weight: 4425.27 Da        Isoelectric Point: 10.2040

>T293564 WP_002809516.1 NZ_LT853882:3991111-3991245 [Xanthomonas fragariae]
MKRAIVLLVLSVLSVGILSGCNTVAGAGKDVKGAGEKVEDAARK

Download         Length: 135 bp

Antitoxin


Download         Length: 51 a.a.        Molecular weight: 5241.20 Da        Isoelectric Point: 9.4952

>AT293564 WP_002809518.1 NZ_LT853882:3990879-3991031 [Xanthomonas fragariae]
MKRLLTLMVLGLFSAGVMTGCNTFAGAGKDMQRAGSKVEKKADNCSDGKC

Download         Length: 153 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A1Y6HEL5

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A1Y6GQE1

References