293564

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) EcnAB/-
Location 3990879..3991245 Replicon chromosome
Accession NZ_LT853882
Organism Xanthomonas fragariae strain PD885

Toxin (Protein)


Gene name EcnB Uniprot ID A0A1Y6HEL5
Locus tag PD885_RS18545 Protein ID WP_002809516.1
Coordinates 3991111..3991245 (+) Length 45 a.a.

Antitoxin (Protein)


Gene name EcnA Uniprot ID A0A1Y6GQE1
Locus tag PD885_RS18540 Protein ID WP_002809518.1
Coordinates 3990879..3991031 (+) Length 51 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PD885_RS18515 3986217..3986563 - 347 Protein_3561 hypothetical protein -
PD885_RS18520 3987030..3987828 + 799 WP_088057049.1 IS5 family transposase -
PD885_RS18525 3988843..3989073 - 231 Protein_3563 GTPase -
PD885_RS18530 3989096..3989489 - 394 Protein_3564 roadblock/LC7 domain-containing protein -
PD885_RS18535 3989847..3990770 + 924 WP_002809521.1 arginase -
PD885_RS18540 3990879..3991031 + 153 WP_002809518.1 entericidin A/B family lipoprotein Antitoxin
PD885_RS18545 3991111..3991245 + 135 WP_002809516.1 entericidin A/B family lipoprotein Toxin
PD885_RS18550 3991573..3992862 + 1290 WP_002809514.1 tryptophan--tRNA ligase -
PD885_RS18555 3993045..3993245 + 201 Protein_3569 peptidase M20 -
PD885_RS18560 3993406..3994011 + 606 Protein_3570 drug/metabolite exporter YedA -
PD885_RS18565 3994027..3994936 + 910 Protein_3571 EamA family transporter RarD -
PD885_RS18570 3994996..3996111 - 1116 WP_088057050.1 alpha/beta fold hydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Entericidin A/B

(23-42)

Antitoxin

Entericidin A/B

(23-42)


Sequences

Toxin        


Download         Length: 45 a.a.        Molecular weight: 4425.27 Da        Isoelectric Point: 10.2040

>T293564 WP_002809516.1 NZ_LT853882:3991111-3991245 [Xanthomonas fragariae]
MKRAIVLLVLSVLSVGILSGCNTVAGAGKDVKGAGEKVEDAARK

Download         Length: 135 bp

Antitoxin


Download         Length: 51 a.a.        Molecular weight: 5241.20 Da        Isoelectric Point: 9.4952

>AT293564 WP_002809518.1 NZ_LT853882:3990879-3991031 [Xanthomonas fragariae]
MKRLLTLMVLGLFSAGVMTGCNTFAGAGKDMQRAGSKVEKKADNCSDGKC

Download         Length: 153 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A1Y6HEL5

Antitoxin

Source ID Structure
AlphaFold DB A0A1Y6GQE1

References