Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009200..2009471 | Replicon | chromosome |
| Accession | NZ_LT838200 | ||
| Organism | Escherichia coli isolate WI2 isolate | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009330..2009433 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009200..2009471 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSZ51_RS10245 | 2005755..2006417 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DSZ51_RS10250 | 2006441..2007097 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DSZ51_RS10255 | 2007199..2007429 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DSZ51_RS10260 | 2007568..2007942 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DSZ51_RS10265 | 2007946..2008818 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DSZ51_RS10270 | 2008831..2009172 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2009200..2009471 | - | 272 | - | - | Antitoxin |
| - | 2009330..2009433 | + | 104 | - | - | Toxin |
| DSZ51_RS10275 | 2009568..2010224 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| DSZ51_RS10280 | 2010225..2010416 | - | 192 | WP_000457842.1 | YebW family protein | - |
| DSZ51_RS10285 | 2010521..2010757 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DSZ51_RS10290 | 2010875..2012314 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293540 NZ_LT838200:2009330-2009433 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293540 NZ_LT838200:c2009471-2009200 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
