Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009192..2009463 | Replicon | chromosome |
| Accession | NZ_LT838196 | ||
| Organism | Escherichia coli isolate WI1 isolate | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009322..2009425 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009192..2009463 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WI2_RS10210 | 2005747..2006409 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| WI2_RS10215 | 2006433..2007089 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| WI2_RS10220 | 2007191..2007421 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| WI2_RS10225 | 2007560..2007934 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| WI2_RS10230 | 2007938..2008810 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| WI2_RS10235 | 2008823..2009164 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2009192..2009463 | - | 272 | - | - | Antitoxin |
| - | 2009322..2009425 | + | 104 | - | - | Toxin |
| WI2_RS10240 | 2009560..2010216 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| WI2_RS10245 | 2010217..2010408 | - | 192 | WP_000457842.1 | YebW family protein | - |
| WI2_RS10250 | 2010513..2010749 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| WI2_RS10255 | 2010867..2012306 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293515 NZ_LT838196:2009322-2009425 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293515 NZ_LT838196:c2009463-2009192 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
