Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1981253..1981521 | Replicon | chromosome |
| Accession | NZ_LT827011 | ||
| Organism | Escherichia coli O127:H6 isolate EPEC E2348/69 variety | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1981291..1981393 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1981253..1981521 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BQ9544_RS10725 | 1978410..1979849 | + | 1440 | WP_001339709.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BQ9544_RS10730 | 1979967..1980203 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BQ9544_RS10735 | 1980308..1980499 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BQ9544_RS10740 | 1980500..1981156 | - | 657 | WP_000812706.1 | protein-serine/threonine phosphatase | - |
| - | 1981253..1981521 | + | 269 | - | - | Antitoxin |
| - | 1981291..1981393 | - | 103 | - | - | Toxin |
| BQ9544_RS10745 | 1981551..1981892 | - | 342 | WP_000976470.1 | YebY family protein | - |
| BQ9544_RS10750 | 1981905..1982777 | - | 873 | WP_000879263.1 | copper homeostasis membrane protein CopD | - |
| BQ9544_RS10755 | 1982781..1983155 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| BQ9544_RS10760 | 1983294..1983524 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BQ9544_RS10765 | 1983626..1984282 | + | 657 | WP_000011646.1 | carbon-nitrogen hydrolase family protein | - |
| BQ9544_RS10770 | 1984306..1984968 | + | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T293496 NZ_LT827011:c1981393-1981291 [Escherichia coli O127:H6]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT293496 NZ_LT827011:1981253-1981521 [Escherichia coli O127:H6]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
