Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 696385..696551 | Replicon | chromosome |
| Accession | NC_021066 | ||
| Organism | Raoultella ornithinolytica B6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 696443..696546 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 696385..696551 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RORB6_RS03010 | 691523..693583 | + | 2061 | WP_015584010.1 | oligopeptidase B | - |
| RORB6_RS03015 | 693589..694248 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| RORB6_RS03020 | 694327..694557 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| RORB6_RS03025 | 694684..695058 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| RORB6_RS03030 | 695062..695931 | + | 870 | WP_015584011.1 | copper homeostasis membrane protein CopD | - |
| RORB6_RS03035 | 695948..696286 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 696385..696551 | - | 167 | - | - | Antitoxin |
| - | 696443..696546 | + | 104 | - | - | Toxin |
| RORB6_RS26040 | 696856..696999 | - | 144 | WP_015584013.1 | Ecr family regulatory small membrane protein | - |
| RORB6_RS03040 | 697120..698091 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| RORB6_RS03045 | 698234..698878 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| RORB6_RS03050 | 698884..699075 | - | 192 | WP_015584014.1 | YebW family protein | - |
| RORB6_RS03055 | 699169..699408 | - | 240 | WP_004863958.1 | YebV family protein | - |
| RORB6_RS03060 | 699523..700956 | - | 1434 | WP_015584015.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T29348 NC_021066:696443-696546 [Raoultella ornithinolytica B6]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT29348 NC_021066:c696551-696385 [Raoultella ornithinolytica B6]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
