Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2084390..2084661 | Replicon | chromosome |
| Accession | NZ_LT795502 | ||
| Organism | Escherichia coli strain KV7 isolate KV7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2084520..2084623 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2084390..2084661 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KJB12_RS09965 | 2080945..2081607 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KJB12_RS09970 | 2081631..2082287 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KJB12_RS09975 | 2082389..2082619 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KJB12_RS09980 | 2082758..2083132 | + | 375 | WP_213222163.1 | CopC domain-containing protein YobA | - |
| KJB12_RS09985 | 2083136..2084008 | + | 873 | WP_065227081.1 | copper homeostasis membrane protein CopD | - |
| KJB12_RS09990 | 2084021..2084362 | + | 342 | WP_000976474.1 | YebY family protein | - |
| - | 2084390..2084661 | - | 272 | - | - | Antitoxin |
| - | 2084520..2084623 | + | 104 | - | - | Toxin |
| KJB12_RS09995 | 2084757..2085413 | + | 657 | WP_065227080.1 | protein-serine/threonine phosphatase | - |
| KJB12_RS10000 | 2085414..2085605 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KJB12_RS10005 | 2085710..2085946 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KJB12_RS10010 | 2086064..2087503 | - | 1440 | WP_065228237.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293466 NZ_LT795502:2084520-2084623 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCACACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCACACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293466 NZ_LT795502:c2084661-2084390 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGTGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGTGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
