Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-DinJ
Location 586196..586720 Replicon chromosome
Accession NZ_LT706985
Organism Propionimicrobium sp. Marseille-P3275 strain Marseille-P3275T

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CZ356_RS09790 Protein ID WP_197684216.1
Coordinates 586196..586372 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CZ356_RS02685 Protein ID WP_076388501.1
Coordinates 586466..586720 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CZ356_RS02675 582099..585461 + 3363 WP_076388499.1 AAA family ATPase -
CZ356_RS09790 586196..586372 - 177 WP_197684216.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
CZ356_RS02685 586466..586720 - 255 WP_076388501.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
CZ356_RS02690 586890..587777 - 888 Protein_529 phage tail protein -
CZ356_RS02695 587934..588878 + 945 WP_076388503.1 Abi family protein -
CZ356_RS02700 589062..589457 - 396 Protein_531 hypothetical protein -
CZ356_RS02705 589621..590034 + 414 WP_076388505.1 DUF4418 family protein -
CZ356_RS02710 590119..591249 + 1131 WP_162272861.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(3-58)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(2-69)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 7092.98 Da        Isoelectric Point: 7.4015

>T293449 WP_197684216.1 NZ_LT706985:c586372-586196 [Propionimicrobium sp. Marseille-P3275]
MRQNRDELRTRYRDHALQGNRKGYREIHLEGDWLLIYRVEHSELLLVLTRTGSHDDLF

Download         Length: 177 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9149.14 Da        Isoelectric Point: 4.3855

>AT293449 WP_076388501.1 NZ_LT706985:c586720-586466 [Propionimicrobium sp. Marseille-P3275]
MANVSFRTDDETKAQAAELFRDLGLDMSTAINMFLRQSIVSNGIPFTPHRESPTSALARAEVESRSGASFRNGAELMADL
NEAD

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References