Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1980909..1981056 Replicon chromosome
Accession NZ_LT615367
Organism Dickeya aquatica strain 174/2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1980972..1981052 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1980909..1981056 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DAQ1742_RS08915 1978232..1980286 + 2055 WP_035342463.1 exodeoxyribonuclease V subunit alpha -
DAQ1742_RS08920 1980466..1980804 + 339 WP_035342460.1 YebY family protein -
- 1980909..1981056 - 148 - - Antitoxin
- 1980972..1981052 + 81 - - Toxin
DAQ1742_RS08925 1981337..1982269 - 933 Protein_1726 integrase arm-type DNA-binding domain-containing protein -
DAQ1742_RS08930 1982863..1984002 + 1140 WP_035342458.1 ImmA/IrrE family metallo-endopeptidase -
DAQ1742_RS08935 1984002..1984502 + 501 WP_051124052.1 DUF4411 family protein -
DAQ1742_RS08940 1985556..1985885 - 330 WP_035342454.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T293327 NZ_LT615367:1980972-1981052 [Dickeya aquatica]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGGATACAGGAATCGTATTCGGTCTTTTTT
T

Antitoxin


Download         Length: 148 bp

>AT293327 NZ_LT615367:c1981056-1980909 [Dickeya aquatica]
AGATAAAAAAAGACCGAATACGATTCCTGTATCCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTGTGCGTGCTGTATCACAGCTCGCTCTTTAAGAGTAGTCGACGCACCTGTGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References