Detailed information of TA system TA293286

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): omega-epsilon-zeta/-
• Location: 511590..513156
• Replicon: chromosome
• Accession: NZ_LT604072
• Organism: Xanthomonas translucens pv. translucens DSM 18974 isolate peng1

Toxin (Protein)

• Gene name: avrRxo1
• Uniprot ID: -
• Locus tag: BFP94_RS19655
• Protein ID: WP_003480647.1
• Coordinates: 511900..513156 (-)
• Length: 419 a.a.

Antitoxin (Protein)

• Gene name: arc1
• Uniprot ID: -
• Locus tag: BFP94_RS19650
• Protein ID: WP_003480646.1
• Coordinates: 511590..511886 (-)
• Length: 99 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BFP94_RS02135	507452..508366	-	915	WP_003465336.1	YihY/virulence factor BrkB family protein	-
BFP94_RS02140	508501..508950	-	450	WP_003480639.1	GatB/YqeY domain-containing protein	-
BFP94_RS02145	509230..509445	-	216	WP_003465342.1	30S ribosomal protein S21	-
BFP94_RS02150	509567..510715	+	1149	WP_058360827.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
BFP94_RS02155	510708..511061	+	354	WP_003480645.1	dihydroneopterin aldolase	-
BFP94_RS21240	511142..511417	+	276	WP_157291423.1	hypothetical protein	-
BFP94_RS19650	511590..511886	-	297	WP_003480646.1	hypothetical protein	Antitoxin
BFP94_RS19655	511900..513156	-	1257	WP_003480647.1	zeta toxin family protein	Toxin
BFP94_RS02160	513456..514904	+	1449	WP_003480648.1	circularly permuted type 2 ATP-grasp protein	-
BFP94_RS02165	514904..515845	+	942	WP_003465367.1	alpha-E domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Zeta toxin domain (148-285)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 419 a.a.
• Molecular weight: 45042.67 Da
• Isoelectric Point: 6.6145

>T293286 WP_003480647.1 NZ_LT604072:c513156-511900 [Xanthomonas translucens pv. translucens DSM 18974]
MKGKISNACKPDITPILVDGLASTATQGAADDSASRLPQQALLDGLQERPQALKKSNSADWSARTLPQWAPGPGTSSKAL
LIQSPPHPTSSDEMFGLGELPAPGKARWEYLTKTENWHPERQELHSRLLSQARTASLRLAESIESDGYPPTLFALRGNTA
TGKTRIATKTIPVLANALKKSSGGGCINPDIFKRSLAESQGEAMKLSSAQVHAESCVLADRLENELRSQRTTSGAMASIL
VDKRLANTHEVDSYVSLAKETGRKVELCDIDAPLERSLMGVLQRSPGGDDPRPPYVAVANGFSTVRSNRLDVIDRFLSNP
TLGSYRLFGTNEKGEKVMVASVADGELSIHDPQLYESITAPEDFNSGDKGEQVIDTALIDRLSNSIDDPKRATDARAALE
KYKGMTWSNALAAHSSLI

Nucleotide

• Length: 1257 bp

Antitoxin

Protein

• Length: 99 a.a.
• Molecular weight: 11088.54 Da
• Isoelectric Point: 7.3576

>AT293286 WP_003480646.1 NZ_LT604072:c511886-511590 [Xanthomonas translucens pv. translucens DSM 18974]
MTHLKGADALALHKKLKERNASLRSAELDSAKALAHESGKERFNLEKLESICDTTQAGRITDPNDRQAIYEQMYYVEHPK
VSTLQEFARIVVTISSWS

Nucleotide

• Length: 297 bp