Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1057191..1057462 | Replicon | chromosome |
| Accession | NZ_LT601384 | ||
| Organism | Escherichia coli isolate NCTC86EC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1057321..1057424 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1057191..1057462 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCTC86EC_RS04970 | 1053746..1054408 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NCTC86EC_RS04975 | 1054432..1055088 | - | 657 | WP_066009212.1 | carbon-nitrogen hydrolase family protein | - |
| NCTC86EC_RS04980 | 1055190..1055420 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NCTC86EC_RS04985 | 1055559..1055933 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NCTC86EC_RS04990 | 1055937..1056809 | + | 873 | WP_066009214.1 | copper homeostasis membrane protein CopD | - |
| NCTC86EC_RS04995 | 1056822..1057163 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1057191..1057462 | - | 272 | - | - | Antitoxin |
| - | 1057321..1057424 | + | 104 | - | - | Toxin |
| NCTC86EC_RS05005 | 1057559..1058215 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NCTC86EC_RS05010 | 1058216..1058407 | - | 192 | WP_000457842.1 | YebW family protein | - |
| NCTC86EC_RS05015 | 1058512..1058748 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| NCTC86EC_RS05020 | 1058866..1060305 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293261 NZ_LT601384:1057321-1057424 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293261 NZ_LT601384:c1057462-1057191 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
