Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2617148..2617242 | Replicon | chromosome |
| Accession | NZ_LT596221 | ||
| Organism | Yersinia pseudotuberculosis isolate NZYP4713 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2617149..2617242 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2617148..2617242 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BN7064_RS22690 | 2612992..2613375 | + | 384 | WP_158499507.1 | hypothetical protein | - |
| BN7064_RS11970 | 2613397..2614371 | + | 975 | WP_012413651.1 | hypothetical protein | - |
| BN7064_RS11975 | 2614788..2615204 | + | 417 | Protein_2251 | hypothetical protein | - |
| BN7064_RS11980 | 2615148..2616356 | - | 1209 | WP_002209743.1 | IS256 family transposase | - |
| BN7064_RS11985 | 2616563..2616889 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 2617148..2617242 | + | 95 | - | - | Antitoxin |
| - | 2617149..2617242 | - | 94 | - | - | Toxin |
| BN7064_RS11990 | 2617412..2617753 | - | 342 | WP_002211095.1 | YebY family protein | - |
| BN7064_RS11995 | 2617850..2618734 | - | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| BN7064_RS12000 | 2618737..2619123 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| BN7064_RS12005 | 2619502..2620011 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| BN7064_RS12010 | 2620412..2620642 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| BN7064_RS12015 | 2620702..2621652 | - | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2615148..2616356 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T293232 NZ_LT596221:c2617242-2617149 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT293232 NZ_LT596221:2617148-2617242 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
