Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2820569..2820840 | Replicon | chromosome |
| Accession | NZ_LT594504 | ||
| Organism | Escherichia coli isolate E. coli RL465 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2820607..2820710 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2820569..2820840 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RL465_RS13700 | 2817726..2819165 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RL465_RS13705 | 2819283..2819519 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RL465_RS13710 | 2819624..2819815 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RL465_RS13715 | 2819816..2820472 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2820569..2820840 | + | 272 | - | - | Antitoxin |
| - | 2820607..2820710 | - | 104 | - | - | Toxin |
| RL465_RS13720 | 2820868..2821209 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RL465_RS13725 | 2821222..2822094 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RL465_RS13730 | 2822098..2822472 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RL465_RS13735 | 2822611..2822841 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RL465_RS13740 | 2822943..2823599 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RL465_RS13745 | 2823623..2824285 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293216 NZ_LT594504:c2820710-2820607 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293216 NZ_LT594504:2820569-2820840 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
