Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4168302..4168451 | Replicon | chromosome |
| Accession | NZ_LT556085 | ||
| Organism | Citrobacter amalonaticus strain 92 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4168308..4168411 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4168302..4168451 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CITRO92_RS20610 | 4165411..4166850 | + | 1440 | WP_109740636.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CITRO92_RS20615 | 4166965..4167201 | + | 237 | WP_161215572.1 | DUF1480 family protein | - |
| CITRO92_RS20620 | 4167303..4167494 | + | 192 | WP_043000391.1 | YebW family protein | - |
| CITRO92_RS20625 | 4167495..4168157 | - | 663 | WP_109740319.1 | protein-serine/threonine phosphatase | - |
| - | 4168302..4168451 | + | 150 | - | - | Antitoxin |
| - | 4168308..4168411 | - | 104 | - | - | Toxin |
| CITRO92_RS20630 | 4168567..4168905 | - | 339 | WP_043000379.1 | YebY family protein | - |
| CITRO92_RS20635 | 4168922..4169794 | - | 873 | WP_090049236.1 | copper homeostasis membrane protein CopD | - |
| CITRO92_RS20640 | 4169797..4170171 | - | 375 | WP_043000377.1 | CopC domain-containing protein YobA | - |
| CITRO92_RS20645 | 4170309..4170539 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| CITRO92_RS20650 | 4170648..4171310 | + | 663 | WP_109740320.1 | carbon-nitrogen hydrolase family protein | - |
| CITRO92_RS20655 | 4171334..4171996 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293156 NZ_LT556085:c4168411-4168308 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 150 bp
>AT293156 NZ_LT556085:4168302-4168451 [Citrobacter amalonaticus]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
