Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2760512..2760661 | Replicon | chromosome |
| Accession | NZ_LT556084 | ||
| Organism | Citrobacter amalonaticus strain 86 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2760552..2760655 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2760512..2760661 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CITRO86_RS13790 | 2756967..2757629 | - | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
| CITRO86_RS13795 | 2757653..2758315 | - | 663 | WP_109740320.1 | carbon-nitrogen hydrolase family protein | - |
| CITRO86_RS13800 | 2758424..2758654 | - | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| CITRO86_RS13805 | 2758792..2759166 | + | 375 | WP_043000377.1 | CopC domain-containing protein YobA | - |
| CITRO86_RS13810 | 2759169..2760041 | + | 873 | WP_090049236.1 | copper homeostasis membrane protein CopD | - |
| CITRO86_RS13815 | 2760058..2760396 | + | 339 | WP_043000379.1 | YebY family protein | - |
| - | 2760512..2760661 | - | 150 | - | - | Antitoxin |
| - | 2760552..2760655 | + | 104 | - | - | Toxin |
| CITRO86_RS13820 | 2760806..2761468 | + | 663 | WP_109740319.1 | protein-serine/threonine phosphatase | - |
| CITRO86_RS13825 | 2761469..2761660 | - | 192 | WP_043000391.1 | YebW family protein | - |
| CITRO86_RS13830 | 2761762..2761998 | - | 237 | WP_161215572.1 | DUF1480 family protein | - |
| CITRO86_RS13835 | 2762113..2763552 | - | 1440 | WP_109740636.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293136 NZ_LT556084:2760552-2760655 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 150 bp
>AT293136 NZ_LT556084:c2760661-2760512 [Citrobacter amalonaticus]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
