293121

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 41362..41809 Replicon plasmid p58T2
Accession NZ_LT222314
Organism Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf

Toxin (Protein)


Gene name relE Uniprot ID A0A3M4C5F0
Locus tag PCPL58_RS00740 Protein ID WP_003348606.1
Coordinates 41362..41634 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A3M4C5H0
Locus tag PCPL58_RS00745 Protein ID WP_005730485.1
Coordinates 41624..41809 (-) Length 62 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PCPL58_RS00740 41362..41634 - 273 WP_003348606.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PCPL58_RS00745 41624..41809 - 186 WP_005730485.1 hypothetical protein Antitoxin
PCPL58_RS00750 41860..42138 - 279 WP_003320513.1 hypothetical protein -
PCPL58_RS00755 42231..42866 - 636 WP_065348598.1 recombinase family protein -
PCPL58_RS00760 43113..44093 + 981 Protein_45 Y-family DNA polymerase -
PCPL58_RS30420 44283..44513 + 231 WP_081591423.1 DUF4113 domain-containing protein -
PCPL58_RS31330 44547..44816 - 270 WP_024421178.1 hypothetical protein -
PCPL58_RS00775 45017..46021 - 1005 WP_005615818.1 ParB/RepB/Spo0J family partition protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..70584 70584


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-89)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10199.67 Da        Isoelectric Point: 5.0749

>T293121 WP_003348606.1 NZ_LT222314:c41634-41362 [Pseudomonas cerasi]
VLVEWLPQALEALEEIAGYLAERNPYAAEQMQATLEATVEALPLHPYIHRPGRVPGTREAVVHPNYLVVYRVGTERISIL
DVLHARQEYP

Download         Length: 273 bp

Antitoxin


Download         Length: 62 a.a.        Molecular weight: 7292.18 Da        Isoelectric Point: 7.2040

>AT293121 WP_005730485.1 NZ_LT222314:c41809-41624 [Pseudomonas cerasi]
MSIQLDPRVSEFETQEQADNYDRWFRQRIEHSLADPRPPVPHDEAMARVRAMIEAKRRRAS

Download         Length: 186 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3M4C5F0

Antitoxin

Source ID Structure
AlphaFold DB A0A3M4C5H0

References