Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2155037..2155305 | Replicon | chromosome |
| Accession | NZ_LS999560 | ||
| Organism | Escherichia coli isolate EC-TO143 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2155165..2155267 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2155037..2155305 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECTO143_RS10495 | 2151590..2152252 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECTO143_RS10500 | 2152276..2152932 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| ECTO143_RS10505 | 2153034..2153264 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECTO143_RS10510 | 2153403..2153777 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECTO143_RS10515 | 2153781..2154653 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| ECTO143_RS10520 | 2154666..2155007 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2155037..2155305 | - | 269 | - | - | Antitoxin |
| - | 2155165..2155267 | + | 103 | - | - | Toxin |
| ECTO143_RS10525 | 2155402..2156058 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| ECTO143_RS10530 | 2156059..2156250 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ECTO143_RS10535 | 2156355..2156591 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECTO143_RS10540 | 2156708..2158147 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T293067 NZ_LS999560:2155165-2155267 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT293067 NZ_LS999560:c2155305-2155037 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
