Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2859490..2859693 | Replicon | chromosome |
| Accession | NZ_LS999206 | ||
| Organism | Enterobacter hormaechei isolate EC-TO80 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2859497..2859600 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2859490..2859693 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECLTO80_RS14090 | 2855590..2856249 | + | 660 | WP_133982662.1 | DNA methyltransferase | - |
| ECLTO80_RS14095 | 2856246..2856465 | + | 220 | Protein_2723 | hypothetical protein | - |
| ECLTO80_RS14100 | 2856462..2856998 | + | 537 | WP_133982660.1 | hypothetical protein | - |
| ECLTO80_RS14105 | 2856995..2857186 | + | 192 | WP_133982658.1 | DUF1382 family protein | - |
| ECLTO80_RS14110 | 2857183..2857413 | + | 231 | WP_006176201.1 | hypothetical protein | - |
| ECLTO80_RS14115 | 2857505..2857729 | + | 225 | WP_058692128.1 | TraR/DksA family transcriptional regulator | - |
| ECLTO80_RS14120 | 2857738..2857938 | - | 201 | WP_133982949.1 | hypothetical protein | - |
| ECLTO80_RS14125 | 2858093..2858365 | + | 273 | WP_023300430.1 | hypothetical protein | - |
| ECLTO80_RS14130 | 2858334..2859419 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2859490..2859693 | + | 204 | - | - | Antitoxin |
| - | 2859497..2859600 | - | 104 | - | - | Toxin |
| ECLTO80_RS14135 | 2859743..2860081 | - | 339 | WP_033486805.1 | YebY family protein | - |
| ECLTO80_RS14140 | 2860098..2860967 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| ECLTO80_RS14145 | 2860969..2861340 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| ECLTO80_RS14150 | 2861478..2861708 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| ECLTO80_RS14155 | 2861820..2862470 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| ECLTO80_RS14160 | 2862494..2863156 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB | 2801545..2865213 | 63668 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293048 NZ_LS999206:c2859600-2859497 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT293048 NZ_LS999206:2859490-2859693 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
