Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2081149..2081420 | Replicon | chromosome |
| Accession | NZ_LS998785 | ||
| Organism | Escherichia coli isolate EC-TO75 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2081279..2081382 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2081149..2081420 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECTO75_RS10100 | 2077704..2078366 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECTO75_RS10105 | 2078390..2079046 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECTO75_RS10110 | 2079148..2079378 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECTO75_RS10115 | 2079517..2079891 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECTO75_RS10120 | 2079895..2080767 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| ECTO75_RS10125 | 2080780..2081121 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2081149..2081420 | - | 272 | - | - | Antitoxin |
| - | 2081279..2081382 | + | 104 | - | - | Toxin |
| ECTO75_RS10130 | 2081517..2082173 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ECTO75_RS10135 | 2082174..2082365 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ECTO75_RS10140 | 2082470..2082706 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECTO75_RS10145 | 2082824..2084263 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293017 NZ_LS998785:2081279-2081382 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293017 NZ_LS998785:c2081420-2081149 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
