Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2335312..2335580 | Replicon | chromosome |
| Accession | NZ_LS992192 | ||
| Organism | Escherichia coli isolate Escherichia coli str. TO217 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2335440..2335542 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2335312..2335580 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECTO217_RS11785 | 2331865..2332527 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECTO217_RS11790 | 2332551..2333207 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| ECTO217_RS11795 | 2333309..2333539 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECTO217_RS11800 | 2333678..2334052 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECTO217_RS11805 | 2334056..2334928 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| ECTO217_RS11810 | 2334941..2335282 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2335312..2335580 | - | 269 | - | - | Antitoxin |
| - | 2335440..2335542 | + | 103 | - | - | Toxin |
| ECTO217_RS11815 | 2335677..2336333 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| ECTO217_RS11820 | 2336334..2336525 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ECTO217_RS11825 | 2336630..2336866 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECTO217_RS11830 | 2336983..2338422 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2254763..2351419 | 96656 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T292945 NZ_LS992192:2335440-2335542 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT292945 NZ_LS992192:c2335580-2335312 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
