Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2284444..2284712 Replicon chromosome
Accession NZ_LS992190
Organism Escherichia coli isolate Escherichia coli str. TO148

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2284572..2284674 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2284444..2284712 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ECTO148_RS11290 2280997..2281659 - 663 WP_000944256.1 exodeoxyribonuclease X -
ECTO148_RS11295 2281683..2282339 - 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
ECTO148_RS11300 2282441..2282671 - 231 WP_000916763.1 DNA polymerase III subunit theta -
ECTO148_RS11305 2282810..2283184 + 375 WP_000168747.1 CopC domain-containing protein YobA -
ECTO148_RS11310 2283188..2284060 + 873 WP_000879317.1 copper homeostasis membrane protein CopD -
ECTO148_RS11315 2284073..2284414 + 342 WP_000976472.1 YebY family protein -
- 2284444..2284712 - 269 - - Antitoxin
- 2284572..2284674 + 103 - - Toxin
ECTO148_RS11320 2284809..2285465 + 657 WP_000812745.1 protein-serine/threonine phosphatase -
ECTO148_RS11325 2285466..2285657 - 192 WP_001296140.1 YebW family protein -
ECTO148_RS11330 2285762..2285998 - 237 WP_001295499.1 DUF1480 family protein -
ECTO148_RS11335 2286115..2287554 - 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T292919 NZ_LS992190:2284572-2284674 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT292919 NZ_LS992190:c2284712-2284444 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References