Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2284444..2284712 | Replicon | chromosome |
Accession | NZ_LS992190 | ||
Organism | Escherichia coli isolate Escherichia coli str. TO148 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2284572..2284674 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2284444..2284712 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ECTO148_RS11290 | 2280997..2281659 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
ECTO148_RS11295 | 2281683..2282339 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
ECTO148_RS11300 | 2282441..2282671 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
ECTO148_RS11305 | 2282810..2283184 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
ECTO148_RS11310 | 2283188..2284060 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
ECTO148_RS11315 | 2284073..2284414 | + | 342 | WP_000976472.1 | YebY family protein | - |
- | 2284444..2284712 | - | 269 | - | - | Antitoxin |
- | 2284572..2284674 | + | 103 | - | - | Toxin |
ECTO148_RS11320 | 2284809..2285465 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
ECTO148_RS11325 | 2285466..2285657 | - | 192 | WP_001296140.1 | YebW family protein | - |
ECTO148_RS11330 | 2285762..2285998 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
ECTO148_RS11335 | 2286115..2287554 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T292919 NZ_LS992190:2284572-2284674 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT292919 NZ_LS992190:c2284712-2284444 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT